Variant report

Variant	rs56039725
Chromosome Location	chr8:89477291-89477292
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10093191	0.91[ASN][1000 genomes]
rs10095262	0.91[ASN][1000 genomes]
rs10095499	0.91[ASN][1000 genomes]
rs10096195	0.91[ASN][1000 genomes]
rs10098834	0.91[ASN][1000 genomes]
rs10099075	0.91[ASN][1000 genomes]
rs10099233	0.91[ASN][1000 genomes]
rs10099461	0.91[ASN][1000 genomes]
rs10103178	0.85[ASN][1000 genomes]
rs10103336	0.91[ASN][1000 genomes]
rs10103474	0.91[ASN][1000 genomes]
rs10110453	0.91[ASN][1000 genomes]
rs10112810	0.91[ASN][1000 genomes]
rs10113214	0.91[ASN][1000 genomes]
rs10504839	0.94[ASN][1000 genomes]
rs10504863	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1094197	0.80[ASN][1000 genomes]
rs11995730	0.94[ASN][1000 genomes]
rs1586492	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1601816	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16881745	0.91[ASN][1000 genomes]
rs16882035	0.91[ASN][1000 genomes]
rs16882334	0.91[ASN][1000 genomes]
rs16882368	0.91[ASN][1000 genomes]
rs16882408	0.91[ASN][1000 genomes]
rs16882464	0.94[ASN][1000 genomes]
rs16882621	0.94[ASN][1000 genomes]
rs16882622	0.94[ASN][1000 genomes]
rs16882960	0.94[ASN][1000 genomes]
rs16882980	0.94[ASN][1000 genomes]
rs16883962	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28414285	0.91[ASN][1000 genomes]
rs28453085	0.81[ASN][1000 genomes]
rs28561765	0.84[EUR][1000 genomes]
rs28581869	0.91[ASN][1000 genomes]
rs28758406	0.85[ASN][1000 genomes]
rs28768402	0.91[ASN][1000 genomes]
rs36116061	0.85[ASN][1000 genomes]
rs4559289	0.86[EUR][1000 genomes]
rs55684806	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55743536	0.94[ASN][1000 genomes]
rs55848977	0.94[ASN][1000 genomes]
rs56010350	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56324438	0.94[ASN][1000 genomes]
rs56691611	0.94[ASN][1000 genomes]
rs56912549	0.91[ASN][1000 genomes]
rs57047577	0.94[ASN][1000 genomes]
rs57195479	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57771217	0.91[ASN][1000 genomes]
rs58164144	0.94[ASN][1000 genomes]
rs58337229	0.91[ASN][1000 genomes]
rs58399951	0.94[ASN][1000 genomes]
rs58414801	0.94[ASN][1000 genomes]
rs58453379	0.94[ASN][1000 genomes]
rs58720276	0.94[ASN][1000 genomes]
rs58723841	0.85[ASN][1000 genomes]
rs58754325	0.94[ASN][1000 genomes]
rs58994609	0.94[ASN][1000 genomes]
rs59043278	0.94[ASN][1000 genomes]
rs59107062	0.91[ASN][1000 genomes]
rs59119264	0.94[ASN][1000 genomes]
rs59290812	0.94[ASN][1000 genomes]
rs59425875	0.91[ASN][1000 genomes]
rs59430846	0.91[ASN][1000 genomes]
rs59484067	0.91[ASN][1000 genomes]
rs59580800	0.94[ASN][1000 genomes]
rs59645827	0.94[ASN][1000 genomes]
rs59759655	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59951423	0.91[ASN][1000 genomes]
rs60245117	0.94[ASN][1000 genomes]
rs60336907	0.94[ASN][1000 genomes]
rs60669462	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60779425	0.94[ASN][1000 genomes]
rs60953371	0.94[ASN][1000 genomes]
rs61088422	0.91[ASN][1000 genomes]
rs61109805	0.94[ASN][1000 genomes]
rs61177731	0.94[ASN][1000 genomes]
rs61341431	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6469419	0.94[ASN][1000 genomes]
rs6980734	0.94[ASN][1000 genomes]
rs6988021	0.94[ASN][1000 genomes]
rs6999304	0.87[EUR][1000 genomes]
rs7000891	0.94[ASN][1000 genomes]
rs7001241	0.94[ASN][1000 genomes]
rs7001875	0.94[ASN][1000 genomes]
rs7004757	0.94[ASN][1000 genomes]
rs7005386	0.91[ASN][1000 genomes]
rs7018226	0.94[ASN][1000 genomes]
rs73277124	0.91[ASN][1000 genomes]
rs73279213	0.91[ASN][1000 genomes]
rs73279219	0.91[ASN][1000 genomes]
rs73279224	0.91[ASN][1000 genomes]
rs73279231	0.91[ASN][1000 genomes]
rs73289232	0.91[ASN][1000 genomes]
rs73289254	0.94[ASN][1000 genomes]
rs73289257	0.94[ASN][1000 genomes]
rs73289264	0.94[ASN][1000 genomes]
rs73289267	0.94[ASN][1000 genomes]
rs73291151	0.94[ASN][1000 genomes]
rs73291153	0.94[ASN][1000 genomes]
rs73291154	0.94[ASN][1000 genomes]
rs73291157	0.94[ASN][1000 genomes]
rs73291159	0.94[ASN][1000 genomes]
rs73291160	0.94[ASN][1000 genomes]
rs73291164	0.94[ASN][1000 genomes]
rs73291166	0.94[ASN][1000 genomes]
rs73291175	0.94[ASN][1000 genomes]
rs73291177	0.94[ASN][1000 genomes]
rs73291179	0.94[ASN][1000 genomes]
rs73291181	0.94[ASN][1000 genomes]
rs73291190	0.94[ASN][1000 genomes]
rs73291191	0.94[ASN][1000 genomes]
rs73692571	0.94[ASN][1000 genomes]
rs73694046	0.94[ASN][1000 genomes]
rs73694050	0.94[ASN][1000 genomes]
rs73694056	0.94[ASN][1000 genomes]
rs73694057	0.94[ASN][1000 genomes]
rs7814792	0.94[ASN][1000 genomes]
rs7814799	0.94[ASN][1000 genomes]
rs7845586	0.94[ASN][1000 genomes]
rs9297468	0.91[ASN][1000 genomes]
rs9297469	0.91[ASN][1000 genomes]
rs9297470	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv891172	chr8:89439469-89640705	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89472400-89478000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:89476600-89483800	Weak transcription	Pancreas	Pancrea

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