Variant report

Variant	rs10943698
Chromosome Location	chr6:80934301-80934302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs12209624	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1408292	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1535825	0.88[ASN][1000 genomes]
rs1575541	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1892475	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2322632	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2322633	0.86[ASN][1000 genomes]
rs2322635	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2476826	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2490234	0.84[ASN][1000 genomes]
rs2490239	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2490241	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2490244	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2490245	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2490250	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2490251	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2490253	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2505927	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2505929	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2505932	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2505935	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2505939	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2505940	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2505942	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2505944	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805911	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805913	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3805919	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3828753	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4256394	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4706113	0.85[ASN][1000 genomes]
rs583426	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs590641	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs643987	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs668329	0.81[EUR][1000 genomes]
rs682482	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs684283	0.81[EUR][1000 genomes]
rs686556	0.82[ASN][1000 genomes]
rs688867	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6938280	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs742833	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7741013	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7745301	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7746917	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7770383	0.83[ASN][1000 genomes]
rs806783	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9294172	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9341808	0.84[ASN][1000 genomes]
rs9343974	0.94[ASN][1000 genomes]
rs9343977	0.80[ASN][1000 genomes]
rs9350847	0.82[EUR][1000 genomes]
rs942381	0.90[ASN][1000 genomes]
rs9448911	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886309	chr6:80880138-80959885	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80882400-80935400	Weak transcription	Dnd41	blood
2	chr6:80896400-80943800	Weak transcription	Right Ventricle	heart
3	chr6:80908000-80936200	Weak transcription	Fetal Lung	lung
4	chr6:80909000-80940200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:80911800-80935200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:80914600-80980400	Weak transcription	Ovary	ovary
7	chr6:80914800-80934400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:80914800-80938400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:80914800-80938600	Weak transcription	Liver	Liver
10	chr6:80915400-80938200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:80915400-80942000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:80915800-80956000	Weak transcription	Brain Substantia Nigra	brain
13	chr6:80920800-80943600	Weak transcription	Psoas Muscle	Psoas
14	chr6:80920800-80953800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:80921200-80940200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:80921200-80940200	Weak transcription	HSMMtube	muscle
17	chr6:80921400-80973200	Weak transcription	Primary B cells from cord blood	blood
18	chr6:80921600-80938400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:80922200-80964200	Weak transcription	Fetal Intestine Small	intestine
20	chr6:80924000-80938400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:80924000-80942800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:80924000-80968400	Weak transcription	Gastric	stomach
23	chr6:80924000-80976000	Weak transcription	HSMM	muscle
24	chr6:80924200-80938600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:80927800-80959800	Weak transcription	Aorta	Aorta
26	chr6:80928000-80936000	Weak transcription	Fetal Stomach	stomach
27	chr6:80929400-80938000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:80929400-80969200	Weak transcription	Left Ventricle	heart
29	chr6:80931800-80934400	Enhancers	NHDF-Ad	bronchial
30	chr6:80931800-80938000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:80932800-80956200	Weak transcription	Lung	lung
32	chr6:80933600-80943800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:80934000-80934600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:80934000-80937000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:80934200-80934600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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