Variant report

Variant	rs1535825
Chromosome Location	chr6:80938586-80938587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80935860..80938788-chr6:80939449..80942433,2	K562	blood:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10080237	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs1015158	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs10806185	0.85[CEU][hapmap]
rs10943696	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs10943698	0.88[ASN][1000 genomes]
rs10943699	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs11962614	0.84[CEU][hapmap]
rs12209624	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1324120	0.85[CEU][hapmap]
rs1324121	0.83[EUR][1000 genomes]
rs1324122	0.83[EUR][1000 genomes]
rs1324123	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs1359239	0.92[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1408292	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1575541	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1892475	1.00[CHB][hapmap]
rs2179842	0.89[CEU][hapmap]
rs2256531	0.95[CHB][hapmap]
rs2298307	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap]
rs2322631	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs2322632	1.00[CHB][hapmap]
rs2322633	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2322635	1.00[CHB][hapmap];0.82[CHD][hapmap];0.86[ASN][1000 genomes]
rs2476826	1.00[CHB][hapmap];0.85[CHD][hapmap];0.84[ASN][1000 genomes]
rs2490234	1.00[CHB][hapmap]
rs2490239	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs2490241	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2490244	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2490245	0.95[CHB][hapmap];0.81[CHD][hapmap];0.84[ASN][1000 genomes]
rs2490250	0.86[ASN][1000 genomes]
rs2490251	1.00[CHB][hapmap];0.85[CHD][hapmap];0.86[ASN][1000 genomes]
rs2505932	1.00[CHB][hapmap]
rs2505940	1.00[CHB][hapmap]
rs2505944	0.86[ASN][1000 genomes]
rs2874829	0.83[CEU][hapmap]
rs3793000	0.83[CEU][hapmap]
rs3805885	0.85[CEU][hapmap]
rs3805903	0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs3805907	0.85[CEU][hapmap]
rs3805911	1.00[CHB][hapmap];0.82[CHD][hapmap];0.88[ASN][1000 genomes]
rs3805913	1.00[CHB][hapmap];0.85[CHD][hapmap];0.87[ASN][1000 genomes]
rs3805919	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs3805922	0.84[CEU][hapmap]
rs3805926	0.84[CEU][hapmap]
rs3812121	0.89[CEU][hapmap]
rs3812126	0.85[CEU][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3828753	1.00[CHB][hapmap];0.85[CHD][hapmap];0.87[ASN][1000 genomes]
rs3828754	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs4256394	0.82[ASN][1000 genomes]
rs4437429	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs4706113	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4706831	0.88[CEU][hapmap]
rs4706834	0.85[CEU][hapmap]
rs583426	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs590641	0.95[CHB][hapmap];0.92[CHD][hapmap];0.87[ASN][1000 genomes]
rs643987	0.93[ASN][1000 genomes]
rs668329	0.81[ASN][1000 genomes]
rs682482	0.89[ASN][1000 genomes]
rs684251	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs684283	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs686556	0.84[ASN][1000 genomes]
rs688867	1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs6907729	0.85[CEU][hapmap]
rs6910201	0.80[EUR][1000 genomes]
rs6916405	0.85[CEU][hapmap]
rs6930534	0.81[EUR][1000 genomes]
rs6938280	0.86[ASN][1000 genomes]
rs742833	0.87[ASN][1000 genomes]
rs7741013	0.86[ASN][1000 genomes]
rs7745301	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7746917	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7770383	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7771449	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs7775977	0.80[EUR][1000 genomes]
rs806783	1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs910266	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs9294171	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs9294172	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs9294173	0.89[CEU][hapmap]
rs9341808	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9341811	0.85[CEU][hapmap]
rs9343971	0.84[CEU][hapmap]
rs9343973	0.80[EUR][1000 genomes]
rs9343974	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9343977	0.88[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9343978	0.85[CEU][hapmap]
rs9352801	0.84[CEU][hapmap]
rs9352803	0.81[CEU][hapmap]
rs9352806	0.85[CEU][hapmap]
rs9352809	0.85[CEU][hapmap]
rs9352817	0.89[CEU][hapmap]
rs9359408	0.88[CEU][hapmap]
rs9359409	0.84[CEU][hapmap]
rs942381	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9448898	0.84[CEU][hapmap]
rs9448899	0.84[CEU][hapmap]
rs9448908	0.80[EUR][1000 genomes]
rs9448909	0.80[EUR][1000 genomes]
rs9448911	1.00[CHB][hapmap];0.85[CHD][hapmap];0.87[ASN][1000 genomes]
rs978814	0.85[CEU][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886309	chr6:80880138-80959885	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80896400-80943800	Weak transcription	Right Ventricle	heart
2	chr6:80909000-80940200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr6:80914600-80980400	Weak transcription	Ovary	ovary
4	chr6:80914800-80938600	Weak transcription	Liver	Liver
5	chr6:80915400-80942000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:80915800-80956000	Weak transcription	Brain Substantia Nigra	brain
7	chr6:80920800-80943600	Weak transcription	Psoas Muscle	Psoas
8	chr6:80920800-80953800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:80921200-80940200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:80921200-80940200	Weak transcription	HSMMtube	muscle
11	chr6:80921400-80973200	Weak transcription	Primary B cells from cord blood	blood
12	chr6:80922200-80964200	Weak transcription	Fetal Intestine Small	intestine
13	chr6:80924000-80942800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:80924000-80968400	Weak transcription	Gastric	stomach
15	chr6:80924000-80976000	Weak transcription	HSMM	muscle
16	chr6:80924200-80938600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:80927800-80959800	Weak transcription	Aorta	Aorta
18	chr6:80929400-80969200	Weak transcription	Left Ventricle	heart
19	chr6:80932800-80956200	Weak transcription	Lung	lung
20	chr6:80933600-80943800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:80935000-80943600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:80935200-80939000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:80936600-80943600	Weak transcription	Pancreas	Pancrea
24	chr6:80936800-80943800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr6:80938000-80939000	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr6:80938000-80956800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:80938200-80939000	Strong transcription	Primary T cells from cord blood	blood
28	chr6:80938200-80939200	Enhancers	HMEC	breast
29	chr6:80938200-80942000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:80938400-80938600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:80938400-80939200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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