Variant report

Variant	rs9352817
Chromosome Location	chr6:81025879-81025880
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81015812..81017908-chr6:81024634..81027101,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10080237	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1015158	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10455370	0.86[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs10733162	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10806185	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs10943696	0.91[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs10943699	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12215236	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1324120	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1324123	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1474791	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1535075	0.95[ASN][1000 genomes]
rs1535825	0.89[CEU][hapmap]
rs1984242	0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2179842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2223873	0.84[ASN][1000 genomes]
rs2223875	0.87[ASN][1000 genomes]
rs2322631	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2322633	0.88[CEU][hapmap]
rs2322748	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2322753	0.87[ASN][1000 genomes]
rs2874829	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs3793000	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3805859	0.84[ASN][1000 genomes]
rs3805869	0.87[ASN][1000 genomes]
rs3805876	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3805877	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3805885	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3805907	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805922	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs3805926	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs3812121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3812126	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3828754	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4437429	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs4706113	0.85[CEU][hapmap]
rs4706831	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4706834	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs585142	0.87[ASN][1000 genomes]
rs627240	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs638056	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs67899433	0.81[EUR][1000 genomes]
rs6907729	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6916405	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6918172	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6930534	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7771449	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs910266	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9294171	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9294173	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9341810	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9341811	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9343971	0.96[CEU][hapmap];0.95[CHB][hapmap]
rs9343974	0.85[CEU][hapmap]
rs9343978	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9350847	1.00[CHB][hapmap]
rs9352803	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9352806	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9352809	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9352812	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9359409	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs9361599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361600	0.94[ASN][1000 genomes]
rs942381	0.85[CEU][hapmap]
rs9448886	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9448898	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9448899	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs978814	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81005200-81056200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81013800-81028800	Weak transcription	HSMM	muscle
3	chr6:81015000-81026400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:81015600-81036400	Weak transcription	Ovary	ovary
5	chr6:81015600-81037400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:81024600-81026800	Weak transcription	Fetal Stomach	stomach
7	chr6:81025400-81026200	Enhancers	Brain Hippocampus Middle	brain
8	chr6:81025400-81026800	Enhancers	Colon Smooth Muscle	Colon
9	chr6:81025600-81026400	Weak transcription	Aorta	Aorta
10	chr6:81025600-81026800	Weak transcription	Brain Substantia Nigra	brain
11	chr6:81025800-81027200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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