Variant report

Variant	rs1535075
Chromosome Location	chr6:81034806-81034807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81032325..81034991-chr6:81050067..81051684,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10455370	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10733162	0.92[ASN][1000 genomes]
rs12215236	0.86[ASN][1000 genomes]
rs1324120	0.86[ASN][1000 genomes]
rs1474791	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1984242	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2179842	0.86[ASN][1000 genomes]
rs2223873	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2223875	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2322748	0.95[ASN][1000 genomes]
rs2322753	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2322765	0.81[EUR][1000 genomes]
rs3793000	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3805859	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3805869	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3805876	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805877	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805885	0.93[ASN][1000 genomes]
rs3805907	0.86[ASN][1000 genomes]
rs3812121	0.86[ASN][1000 genomes]
rs4706117	0.82[EUR][1000 genomes]
rs4706831	0.95[ASN][1000 genomes]
rs4706834	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4706840	0.81[EUR][1000 genomes]
rs585142	0.84[ASN][1000 genomes]
rs627240	0.86[ASN][1000 genomes]
rs638056	0.84[ASN][1000 genomes]
rs6907729	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6916405	0.99[ASN][1000 genomes]
rs6918172	0.99[ASN][1000 genomes]
rs7762895	0.82[EUR][1000 genomes]
rs9294173	0.88[ASN][1000 genomes]
rs9341810	0.86[ASN][1000 genomes]
rs9341811	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9343978	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9350851	0.81[EUR][1000 genomes]
rs9352806	0.86[ASN][1000 genomes]
rs9352809	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9352812	0.92[ASN][1000 genomes]
rs9352817	0.95[ASN][1000 genomes]
rs9352826	0.81[EUR][1000 genomes]
rs9361599	0.95[ASN][1000 genomes]
rs9361600	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1796319	chr6:81034505-81058025	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81005200-81056200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81015600-81036400	Weak transcription	Ovary	ovary
3	chr6:81015600-81037400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:81026800-81037400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:81027000-81044600	Weak transcription	Aorta	Aorta
6	chr6:81029400-81038200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:81029400-81038600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:81029400-81079600	Weak transcription	HSMM	muscle
9	chr6:81032000-81037600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:81033800-81070200	Weak transcription	Left Ventricle	heart
11	chr6:81034000-81039200	Weak transcription	Esophagus	oesophagus

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