Variant report

Variant	rs3805907
Chromosome Location	chr6:80973665-80973666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10080237	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap]
rs1015158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10455370	0.86[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap]
rs10733162	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10806185	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10943696	0.86[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs10943697	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10943699	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11962614	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs12208016	1.00[CHB][hapmap]
rs12215236	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324121	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1324122	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1324123	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1474791	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1535075	0.86[ASN][1000 genomes]
rs1535825	0.85[CEU][hapmap]
rs1984242	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2143887	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2179842	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2298307	0.85[CEU][hapmap];0.95[MEX][hapmap]
rs2322631	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap]
rs2322633	0.85[CEU][hapmap];0.91[MEX][hapmap]
rs2322635	0.87[MEX][hapmap]
rs2322636	0.84[EUR][1000 genomes]
rs2322748	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2476826	0.87[MEX][hapmap]
rs2490224	0.95[CHB][hapmap]
rs2490230	0.95[CHB][hapmap]
rs2490232	0.95[CHB][hapmap]
rs2490239	0.87[MEX][hapmap]
rs2490251	0.87[MEX][hapmap]
rs2874829	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs3793000	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3805876	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3805877	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs3805885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3805911	0.87[MEX][hapmap]
rs3805913	0.87[MEX][hapmap]
rs3805920	0.83[EUR][1000 genomes]
rs3805922	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs3805925	0.82[EUR][1000 genomes]
rs3805926	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs3812121	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3828753	0.87[MEX][hapmap]
rs3828754	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs4437429	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap]
rs4706113	0.82[CEU][hapmap];0.91[MEX][hapmap]
rs4706831	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4706834	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs585142	0.90[ASN][1000 genomes]
rs627240	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.92[ASN][1000 genomes]
rs638056	1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs67899433	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6907729	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6910201	0.84[EUR][1000 genomes]
rs6916405	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6918172	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6930534	0.83[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs7453746	0.95[CHB][hapmap];0.84[CHD][hapmap];0.91[MEX][hapmap]
rs7740627	0.83[EUR][1000 genomes]
rs7771449	0.92[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7775977	0.84[EUR][1000 genomes]
rs910266	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9294170	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.87[MEX][hapmap]
rs9294171	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap]
rs9294173	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9341810	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9341811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9343970	0.82[EUR][1000 genomes]
rs9343971	0.92[CEU][hapmap];0.95[CHB][hapmap];0.82[EUR][1000 genomes]
rs9343973	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9343974	0.82[CEU][hapmap];0.87[MEX][hapmap]
rs9343977	0.82[CEU][hapmap];0.83[MEX][hapmap]
rs9343978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9350847	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs9352801	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs9352803	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9352806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9352809	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9352812	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9352817	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9359408	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs9359409	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs9359411	0.84[EUR][1000 genomes]
rs9361584	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9361599	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9361600	0.84[ASN][1000 genomes]
rs942381	0.81[CEU][hapmap];0.87[MEX][hapmap]
rs9448886	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9448898	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9448899	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9448908	0.84[EUR][1000 genomes]
rs9448909	0.84[EUR][1000 genomes]
rs9448911	0.87[MEX][hapmap]
rs978814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80914600-80980400	Weak transcription	Ovary	ovary
2	chr6:80924000-80976000	Weak transcription	HSMM	muscle
3	chr6:80939000-80974800	Weak transcription	Primary T cells from cord blood	blood
4	chr6:80944000-80982800	Weak transcription	Pancreas	Pancrea
5	chr6:80944600-80977200	Weak transcription	Fetal Stomach	stomach
6	chr6:80957600-80975200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:80960600-80997400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:80964800-81002600	Weak transcription	Liver	Liver
9	chr6:80967600-80976200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:80968400-81006800	Weak transcription	Psoas Muscle	Psoas
11	chr6:80971800-80974600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:80973600-80976000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:80973600-80976600	Weak transcription	Adipose Nuclei	Adipose

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