Variant report

Variant	rs9294170
Chromosome Location	chr6:80814080-80814081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:80813826-80814085	HepG2	liver:	n/a	chr6:80813966-80813977

Variant related genes	Relation type
BCKDHB	TF binding region

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10080237	0.86[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10080500	0.82[ASN][1000 genomes]
rs1015158	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs10806185	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs10943694	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10943696	0.86[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs10943699	0.88[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs11962614	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12203867	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12208016	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12209988	0.82[AMR][1000 genomes]
rs1324120	0.84[CEU][hapmap];0.95[CHB][hapmap]
rs1324123	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2179842	0.88[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.87[MEX][hapmap]
rs2256531	0.87[MEX][hapmap]
rs2298307	0.84[CEU][hapmap];0.86[MEX][hapmap]
rs2322630	0.84[ASN][1000 genomes]
rs2322631	0.86[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2322633	0.84[CEU][hapmap]
rs2490224	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs2490230	1.00[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs2490232	1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.95[ASN][1000 genomes]
rs2505945	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2505946	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2874829	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35355485	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35447745	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3793000	0.86[CEU][hapmap]
rs3805885	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.87[MEX][hapmap]
rs3805907	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.87[MEX][hapmap]
rs3805922	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs3805926	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs3812121	0.88[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.83[MEX][hapmap]
rs3812126	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap]
rs3828754	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs4437429	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4706113	0.81[CEU][hapmap]
rs4706831	0.88[CEU][hapmap];0.95[CHB][hapmap]
rs4706834	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.87[MEX][hapmap]
rs627240	0.95[CHB][hapmap]
rs638056	0.95[CHB][hapmap];0.82[CHD][hapmap]
rs6907729	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.87[MEX][hapmap]
rs6916507	0.84[ASN][1000 genomes]
rs6930534	0.91[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs7453746	0.86[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7771449	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs910266	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs9294171	0.86[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9294173	0.88[CEU][hapmap];0.91[CHB][hapmap]
rs9341811	0.84[CEU][hapmap];0.95[CHB][hapmap]
rs9343971	0.96[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs9343974	0.81[CEU][hapmap]
rs9343978	0.84[CEU][hapmap];0.95[CHB][hapmap]
rs9350846	0.83[ASN][1000 genomes]
rs9350847	0.95[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs9352801	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9352803	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs9352806	0.84[CEU][hapmap];0.95[CHB][hapmap]
rs9352809	0.84[CEU][hapmap];0.95[CHB][hapmap]
rs9359408	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9359409	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9361584	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9361587	0.82[ASN][1000 genomes]
rs942381	0.81[CEU][hapmap]
rs9443734	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9448886	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9448893	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9448897	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9448898	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9448899	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs978814	0.86[ASW][hapmap];0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.87[MEX][hapmap];1.00[YRI][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80809600-80815800	Weak transcription	Aorta	Aorta
2	chr6:80810400-80815400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:80814000-80815800	Enhancers	Liver	Liver

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