Variant report

Variant	rs35447745
Chromosome Location	chr6:80816748-80816749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:80816628..80819022-chr6:80824130..80826174,2	K562	blood:
2	chr13:77600897..77601550-chr6:80816034..80816884,2	NB4	blood:
3	chr6:80815077..80817880-chr6:80835991..80839240,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083123	Chromatin interaction
ENSG00000005812	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10080237	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10080500	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10943694	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10943696	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10943697	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10943699	0.80[AFR][1000 genomes]
rs11962614	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12203867	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12208016	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12209988	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1324123	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2143887	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2298307	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2322630	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2322631	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2322636	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2490224	0.88[ASN][1000 genomes]
rs2490230	0.85[ASN][1000 genomes]
rs2490232	0.88[ASN][1000 genomes]
rs2505945	0.84[ASN][1000 genomes]
rs2505946	0.91[ASN][1000 genomes]
rs2874829	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35355485	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3805920	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3805922	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3805925	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3805926	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3828754	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4437429	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6909546	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6910201	0.85[ASN][1000 genomes]
rs6916507	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6930534	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7450918	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7453746	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7740627	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7753695	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7771449	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7775977	0.85[ASN][1000 genomes]
rs910266	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9294170	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9294171	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9343970	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9343971	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9343973	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9350846	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9350847	0.82[ASN][1000 genomes]
rs9352801	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9352803	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9359408	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9359409	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9359411	0.81[AMR][1000 genomes]
rs9361584	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9361587	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9443734	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9448886	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9448893	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9448897	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9448898	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9448899	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9448908	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9448909	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398521	chr6:80816133-80818281	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80815200-80817400	Active TSS	Fetal Kidney	kidney
2	chr6:80815400-80816800	Active TSS	Rectal Smooth Muscle	rectum
3	chr6:80815400-80817400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:80815600-80816800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
5	chr6:80815600-80816800	Active TSS	Fetal Brain Female	brain
6	chr6:80815600-80816800	Active TSS	Rectal Mucosa Donor 31	rectum
7	chr6:80815600-80817000	Active TSS	Brain Cingulate Gyrus	brain
8	chr6:80815600-80817000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr6:80815600-80817000	Active TSS	Right Atrium	heart
10	chr6:80815600-80817000	Active TSS	A549	lung
11	chr6:80815600-80817200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:80815600-80817200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:80815600-80817200	Active TSS	Brain Hippocampus Middle	brain
14	chr6:80815600-80817200	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr6:80815600-80817200	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr6:80815600-80817400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:80815600-80817400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:80815600-80817400	Active TSS	Fetal Intestine Large	intestine
19	chr6:80815600-80817400	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr6:80815600-80817400	Active TSS	K562	blood
21	chr6:80815600-80817800	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr6:80815600-80817800	Active TSS	Stomach Smooth Muscle	stomach
23	chr6:80815600-80819200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:80815800-80816800	Active TSS	Primary T cells from cord blood	blood
25	chr6:80815800-80816800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:80815800-80816800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:80815800-80816800	Active TSS	Brain Angular Gyrus	brain
28	chr6:80815800-80816800	Active TSS	Fetal Intestine Small	intestine
29	chr6:80815800-80816800	Active TSS	Fetal Muscle Trunk	muscle
30	chr6:80815800-80816800	Active TSS	Fetal Stomach	stomach
31	chr6:80815800-80816800	Active TSS	Fetal Thymus	thymus
32	chr6:80815800-80816800	Active TSS	Stomach Mucosa	stomach
33	chr6:80815800-80816800	Active TSS	Thymus	Thymus
34	chr6:80815800-80816800	Active TSS	HSMM	muscle
35	chr6:80815800-80816800	Active TSS	NH-A	brain
36	chr6:80815800-80817000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:80815800-80817000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:80815800-80817000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
39	chr6:80815800-80817000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:80815800-80817000	Active TSS	Brain Germinal Matrix	brain
41	chr6:80815800-80817000	Active TSS	Colon Smooth Muscle	Colon
42	chr6:80815800-80817000	Active TSS	Ovary	ovary
43	chr6:80815800-80817000	Active TSS	Placenta Amnion	Placenta Amnion
44	chr6:80815800-80817000	Active TSS	Psoas Muscle	Psoas
45	chr6:80815800-80817000	Active TSS	HSMMtube	muscle
46	chr6:80815800-80817000	Active TSS	NHEK	skin
47	chr6:80815800-80817000	Active TSS	Osteobl	bone
48	chr6:80815800-80817200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:80815800-80817200	Active TSS	Brain Anterior Caudate	brain
50	chr6:80815800-80817200	Active TSS	Brain Substantia Nigra	brain

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