Variant report

Variant	rs2490230
Chromosome Location	chr6:80812464-80812465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80802270..80806587-chr6:80809004..80813361,4	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10080237	0.95[CHB][hapmap]
rs1015158	0.90[CHB][hapmap]
rs10806185	0.89[CHB][hapmap]
rs10943696	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs10943699	0.90[CHB][hapmap]
rs11962614	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs12203867	0.81[ASN][1000 genomes]
rs12208016	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs1324120	0.90[CHB][hapmap]
rs1324123	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs2179842	0.95[CHB][hapmap]
rs2256531	0.84[AMR][1000 genomes]
rs2322628	0.80[AMR][1000 genomes]
rs2322631	0.95[CHB][hapmap]
rs2490224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2490232	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2505945	0.85[ASN][1000 genomes]
rs2505946	0.92[ASN][1000 genomes]
rs2874829	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs35355485	0.81[ASN][1000 genomes]
rs35447745	0.85[ASN][1000 genomes]
rs3805885	0.95[CHB][hapmap]
rs3805907	0.95[CHB][hapmap]
rs3805922	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs3805926	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs3812121	0.95[CHB][hapmap]
rs3812126	0.95[CHB][hapmap]
rs3828754	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs4437429	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs4706831	0.90[CHB][hapmap]
rs56706046	0.83[AMR][1000 genomes]
rs627240	0.94[CHB][hapmap]
rs638056	0.95[CHB][hapmap]
rs6907729	0.95[CHB][hapmap]
rs6930534	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7453746	1.00[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs7771449	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs910266	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs9294170	1.00[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs9294171	0.95[CHB][hapmap]
rs9294173	0.85[CHB][hapmap]
rs9341811	0.90[CHB][hapmap]
rs9343971	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs9343978	0.90[CHB][hapmap]
rs9350847	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs9352801	0.85[CHB][hapmap];0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs9352803	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs9352806	0.89[CHB][hapmap]
rs9352809	0.90[CHB][hapmap]
rs9359408	0.90[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs9359409	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs9361584	0.90[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs9443734	0.81[ASN][1000 genomes]
rs9448886	0.89[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs9448898	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs9448899	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs978814	0.95[CHB][hapmap]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80809600-80815800	Weak transcription	Aorta	Aorta
2	chr6:80810400-80815400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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