Variant report

Variant	rs2256531
Chromosome Location	chr6:80807454-80807455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80806693..80810912-chr6:80813925..80817766,4	K562	blood:

Variant related genes	Relation type
ENSG00000083123	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs12209624	0.95[CHB][hapmap];0.92[JPT][hapmap]
rs1359239	0.84[CHB][hapmap]
rs1408292	0.95[CHB][hapmap];0.92[JPT][hapmap];0.80[AFR][1000 genomes]
rs1535825	0.95[CHB][hapmap]
rs1575541	0.95[CHB][hapmap];0.92[JPT][hapmap]
rs1892475	0.95[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs2298307	1.00[CHB][hapmap];0.81[CHD][hapmap];0.83[MEX][hapmap];0.86[ASN][1000 genomes]
rs2322628	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2322632	0.95[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs2322633	0.95[CHB][hapmap];0.81[CHD][hapmap];0.83[MEX][hapmap];0.81[ASN][1000 genomes]
rs2322635	0.84[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.95[MKK][hapmap];0.80[AFR][1000 genomes]
rs2476826	0.84[ASW][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.92[MKK][hapmap];0.80[ASN][1000 genomes]
rs2490224	0.84[AMR][1000 genomes]
rs2490230	0.84[AMR][1000 genomes]
rs2490232	0.95[MEX][hapmap];0.80[TSI][hapmap]
rs2490234	0.92[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2490239	1.00[ASW][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2490241	0.82[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs2490244	0.95[CHB][hapmap];0.92[JPT][hapmap];0.80[AFR][1000 genomes]
rs2490245	0.84[ASW][hapmap];0.90[CHB][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap]
rs2490250	0.80[AFR][1000 genomes]
rs2490251	0.95[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap]
rs2505927	0.87[ASN][1000 genomes]
rs2505929	0.88[ASN][1000 genomes]
rs2505930	0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2505932	0.95[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs2505935	0.85[ASN][1000 genomes]
rs2505939	0.85[ASN][1000 genomes]
rs2505940	0.95[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs2505942	0.88[AFR][1000 genomes]
rs3805903	0.90[CHB][hapmap]
rs3805911	0.92[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap]
rs3805913	0.84[ASW][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.93[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap]
rs3805919	0.95[CHB][hapmap];0.92[JPT][hapmap]
rs3828753	0.95[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap]
rs4706113	0.95[CHB][hapmap];0.81[CHD][hapmap];0.83[MEX][hapmap];0.82[ASN][1000 genomes]
rs56706046	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs583426	0.95[CHB][hapmap]
rs590641	0.90[CHB][hapmap];0.96[GIH][hapmap];0.93[LWK][hapmap]
rs613588	0.87[GIH][hapmap]
rs648831	0.93[LWK][hapmap]
rs660888	0.87[GIH][hapmap]
rs676311	0.88[GIH][hapmap]
rs684251	0.90[CHB][hapmap]
rs684283	0.90[CHB][hapmap]
rs688867	0.80[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.96[GIH][hapmap];0.93[LWK][hapmap]
rs6936226	0.82[ASW][hapmap];1.00[YRI][hapmap]
rs7453746	0.83[MEX][hapmap]
rs7745301	0.95[CHB][hapmap];0.92[JPT][hapmap]
rs7746917	0.95[CHB][hapmap];0.92[JPT][hapmap]
rs806783	0.95[CHB][hapmap];0.92[GIH][hapmap];0.93[LWK][hapmap]
rs9294170	0.87[MEX][hapmap]
rs9294172	0.94[CHB][hapmap];0.92[JPT][hapmap];0.80[AFR][1000 genomes]
rs9343974	0.95[CHB][hapmap];0.81[CHD][hapmap]
rs9343977	0.90[CHB][hapmap]
rs942381	0.95[CHB][hapmap];0.81[CHD][hapmap]
rs9448911	0.84[ASW][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383458	chr6:80805233-80808331	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links