Variant report

Variant	rs3805903
Chromosome Location	chr6:80975829-80975830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs12209624	0.95[CHB][hapmap]
rs12215236	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1324120	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1359239	0.86[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1408292	0.95[CHB][hapmap]
rs1535825	0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1575541	0.95[CHB][hapmap]
rs1892475	0.95[CHB][hapmap]
rs2179842	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2256531	0.90[CHB][hapmap]
rs2298307	0.88[CEU][hapmap];0.95[CHB][hapmap]
rs2322632	0.95[CHB][hapmap]
rs2322633	0.88[CEU][hapmap];0.95[CHB][hapmap]
rs2322635	0.95[CHB][hapmap]
rs2476826	0.95[CHB][hapmap]
rs2490234	0.95[CHB][hapmap]
rs2490239	0.95[CHB][hapmap]
rs2490241	1.00[CHB][hapmap]
rs2490244	0.95[CHB][hapmap]
rs2490245	0.90[CHB][hapmap]
rs2490251	0.95[CHB][hapmap]
rs2505930	0.81[CHB][hapmap]
rs2505932	0.95[CHB][hapmap]
rs2505940	0.95[CHB][hapmap]
rs3805872	0.80[CHB][hapmap]
rs3805878	0.80[CHB][hapmap]
rs3805907	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3805911	0.95[CHB][hapmap]
rs3805913	0.95[CHB][hapmap]
rs3805919	0.95[CHB][hapmap]
rs3812121	0.82[CEU][hapmap]
rs3828753	0.95[CHB][hapmap]
rs4706113	0.88[CEU][hapmap];0.95[CHB][hapmap]
rs583426	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs590641	1.00[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs607130	0.81[CHB][hapmap]
rs613588	0.80[CHB][hapmap]
rs620147	0.81[CHB][hapmap]
rs623048	0.80[CHB][hapmap]
rs643987	0.82[ASN][1000 genomes]
rs660888	0.80[CHB][hapmap]
rs667097	0.81[CHB][hapmap]
rs668329	0.95[ASN][1000 genomes]
rs676311	0.80[CHB][hapmap]
rs682482	0.87[ASN][1000 genomes]
rs684251	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs684283	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs688867	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs7745301	0.95[CHB][hapmap]
rs7746917	0.95[CHB][hapmap]
rs7770383	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7771593	0.81[CHB][hapmap]
rs806783	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs9294172	0.95[CHB][hapmap]
rs9341808	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9341810	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9343974	0.88[CEU][hapmap];0.95[CHB][hapmap];0.83[EUR][1000 genomes]
rs9343977	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9343978	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9352806	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs942381	0.88[CEU][hapmap];0.95[CHB][hapmap];0.80[EUR][1000 genomes]
rs9448911	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80914600-80980400	Weak transcription	Ovary	ovary
2	chr6:80924000-80976000	Weak transcription	HSMM	muscle
3	chr6:80944000-80982800	Weak transcription	Pancreas	Pancrea
4	chr6:80944600-80977200	Weak transcription	Fetal Stomach	stomach
5	chr6:80960600-80997400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:80964800-81002600	Weak transcription	Liver	Liver
7	chr6:80967600-80976200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:80968400-81006800	Weak transcription	Psoas Muscle	Psoas
9	chr6:80973600-80976000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:80973600-80976600	Weak transcription	Adipose Nuclei	Adipose
11	chr6:80974400-80976600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:80974400-80977200	Weak transcription	Fetal Lung	lung
13	chr6:80975200-80985000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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