Variant report

Variant	rs9341808
Chromosome Location	chr6:80953257-80953258
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:80951610..80958338-chr6:80959333..80963216,7	K562	blood:
2	chr6:80815161..80817619-chr6:80952826..80955295,2	K562	blood:
3	chr6:80951892..80954239-chr6:80973770..80975991,3	K562	blood:

Variant related genes	Relation type
ENSG00000083123	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1015158	0.82[EUR][1000 genomes]
rs10806185	0.82[EUR][1000 genomes]
rs10943698	0.84[ASN][1000 genomes]
rs10943699	0.81[EUR][1000 genomes]
rs12209624	0.83[ASN][1000 genomes]
rs1324121	0.82[EUR][1000 genomes]
rs1324122	0.82[EUR][1000 genomes]
rs1359239	0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1408292	0.81[ASN][1000 genomes]
rs1535825	0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1575541	0.82[ASN][1000 genomes]
rs2322633	0.80[EUR][1000 genomes]
rs2322635	0.81[ASN][1000 genomes]
rs2490244	0.81[ASN][1000 genomes]
rs2490250	0.81[ASN][1000 genomes]
rs2490251	0.81[ASN][1000 genomes]
rs2505944	0.81[ASN][1000 genomes]
rs3805911	0.84[ASN][1000 genomes]
rs3805913	0.83[ASN][1000 genomes]
rs3805919	0.81[ASN][1000 genomes]
rs3812126	0.84[EUR][1000 genomes]
rs3828753	0.83[ASN][1000 genomes]
rs583426	0.92[ASN][1000 genomes]
rs590641	0.86[ASN][1000 genomes]
rs643987	0.91[ASN][1000 genomes]
rs67899433	0.84[EUR][1000 genomes]
rs682482	0.87[ASN][1000 genomes]
rs686556	0.83[ASN][1000 genomes]
rs688867	0.90[ASN][1000 genomes]
rs6938280	0.81[ASN][1000 genomes]
rs742833	0.83[ASN][1000 genomes]
rs7741013	0.81[ASN][1000 genomes]
rs7745301	0.83[ASN][1000 genomes]
rs7746917	0.82[ASN][1000 genomes]
rs7770383	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs806783	0.92[ASN][1000 genomes]
rs9294172	0.83[ASN][1000 genomes]
rs9343974	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9343977	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs942381	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9448911	0.83[ASN][1000 genomes]
rs978814	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886309	chr6:80880138-80959885	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80914600-80980400	Weak transcription	Ovary	ovary
2	chr6:80915800-80956000	Weak transcription	Brain Substantia Nigra	brain
3	chr6:80920800-80953800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:80921400-80973200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:80922200-80964200	Weak transcription	Fetal Intestine Small	intestine
6	chr6:80924000-80968400	Weak transcription	Gastric	stomach
7	chr6:80924000-80976000	Weak transcription	HSMM	muscle
8	chr6:80927800-80959800	Weak transcription	Aorta	Aorta
9	chr6:80929400-80969200	Weak transcription	Left Ventricle	heart
10	chr6:80932800-80956200	Weak transcription	Lung	lung
11	chr6:80938000-80956800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:80939000-80974800	Weak transcription	Primary T cells from cord blood	blood
13	chr6:80939200-80959600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:80940600-80964200	Weak transcription	Liver	Liver
15	chr6:80944000-80960000	Weak transcription	Psoas Muscle	Psoas
16	chr6:80944000-80982800	Weak transcription	Pancreas	Pancrea
17	chr6:80944400-80961600	Weak transcription	Colon Smooth Muscle	Colon
18	chr6:80944600-80977200	Weak transcription	Fetal Stomach	stomach
19	chr6:80945800-80956400	Weak transcription	Fetal Heart	heart
20	chr6:80948800-80953800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:80951400-80959800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:80952200-80956600	Weak transcription	Brain Angular Gyrus	brain
23	chr6:80952800-80960200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:80953200-80953400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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