Variant report

Variant	rs638056
Chromosome Location	chr6:80980808-80980809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80979089..80982797-chr6:80991689..80993882,3	K562	blood:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10080237	1.00[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap]
rs1015158	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10455370	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap]
rs10733162	0.87[ASN][1000 genomes]
rs10806185	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10943696	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs10943699	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs11962614	1.00[CHB][hapmap]
rs12208016	1.00[CHB][hapmap]
rs12215236	0.94[ASN][1000 genomes]
rs1324120	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs1324121	0.82[ASN][1000 genomes]
rs1324122	0.83[ASN][1000 genomes]
rs1324123	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1474791	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1535075	0.84[ASN][1000 genomes]
rs1984242	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2179842	1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs2322631	1.00[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap]
rs2322635	0.82[MEX][hapmap]
rs2322748	0.87[ASN][1000 genomes]
rs2476826	0.82[MEX][hapmap]
rs2490224	0.95[CHB][hapmap]
rs2490230	0.95[CHB][hapmap]
rs2490232	0.95[CHB][hapmap];0.84[CHD][hapmap]
rs2490239	0.82[MEX][hapmap]
rs2490251	0.82[MEX][hapmap]
rs2874829	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs3793000	0.92[ASN][1000 genomes]
rs3805876	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs3805877	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs3805885	1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs3805907	1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs3805911	0.82[MEX][hapmap]
rs3805913	0.81[MEX][hapmap]
rs3805922	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs3805926	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs3812121	1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.94[ASN][1000 genomes]
rs3812126	1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs3828753	0.82[MEX][hapmap]
rs3828754	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs4437429	1.00[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap]
rs4706831	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs4706834	1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs583426	0.81[CEU][hapmap]
rs585142	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs590641	0.82[MEX][hapmap]
rs623048	0.82[AMR][1000 genomes]
rs627240	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.99[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67899433	0.81[ASN][1000 genomes]
rs688867	0.91[MEX][hapmap]
rs6907729	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[ASN][1000 genomes]
rs6916405	0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs6918172	0.84[ASN][1000 genomes]
rs6930534	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7453746	0.95[CHB][hapmap]
rs7771449	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs806783	0.81[CEU][hapmap];0.82[MEX][hapmap]
rs910266	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9294170	0.95[CHB][hapmap];0.82[CHD][hapmap]
rs9294171	1.00[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap]
rs9294173	0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs9341810	0.94[ASN][1000 genomes]
rs9341811	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs9343971	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs9343978	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs9350847	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap]
rs9352801	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs9352803	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9352806	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs9352809	1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs9352812	0.88[ASN][1000 genomes]
rs9352817	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs9359408	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs9359409	1.00[CHB][hapmap]
rs9361584	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9361599	0.87[ASN][1000 genomes]
rs9361600	0.83[ASN][1000 genomes]
rs942381	0.82[MEX][hapmap]
rs9448886	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9448898	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9448899	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9448911	0.82[MEX][hapmap]
rs978814	1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80944000-80982800	Weak transcription	Pancreas	Pancrea
2	chr6:80960600-80997400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:80964800-81002600	Weak transcription	Liver	Liver
4	chr6:80968400-81006800	Weak transcription	Psoas Muscle	Psoas
5	chr6:80975200-80985000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:80977000-80983600	Weak transcription	HSMM	muscle

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