Variant report

Variant	rs9350851
Chromosome Location	chr6:81059188-81059189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1015158	0.83[CHB][hapmap]
rs10455370	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10755395	0.83[ASN][1000 genomes]
rs10806185	0.82[CHB][hapmap]
rs10943696	0.81[CHB][hapmap]
rs10943699	0.83[CHB][hapmap]
rs10943704	0.83[ASN][1000 genomes]
rs12203572	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12209683	0.80[ASN][1000 genomes]
rs1324120	0.83[CHB][hapmap]
rs1324123	0.83[CHB][hapmap]
rs1474791	0.85[CEU][hapmap];0.83[CHB][hapmap];0.82[EUR][1000 genomes]
rs1535075	0.81[EUR][1000 genomes]
rs1572941	0.83[ASN][1000 genomes]
rs1984242	0.86[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2179842	0.86[CHB][hapmap]
rs2223873	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2223875	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2322753	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2322765	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805859	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3805869	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3805876	0.84[CEU][hapmap];0.80[CHB][hapmap];0.81[EUR][1000 genomes]
rs3805877	0.93[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs3805885	0.86[CHB][hapmap]
rs3805907	0.86[CHB][hapmap]
rs3805922	0.83[CHB][hapmap]
rs3805926	0.83[CHB][hapmap]
rs3812121	0.86[CHB][hapmap]
rs3812126	0.86[CHB][hapmap]
rs3828754	0.83[CHB][hapmap]
rs4706117	0.81[EUR][1000 genomes]
rs4706831	0.83[CHB][hapmap]
rs4706834	0.86[CHB][hapmap]
rs4706840	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4706841	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs627240	0.86[CHB][hapmap]
rs638056	0.86[CHB][hapmap]
rs6906078	0.80[ASN][1000 genomes]
rs6906638	0.80[ASN][1000 genomes]
rs6907135	0.80[ASN][1000 genomes]
rs6907729	0.86[CHB][hapmap]
rs6929517	0.80[ASN][1000 genomes]
rs6930534	0.83[CHB][hapmap]
rs7762895	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771449	0.82[CHB][hapmap]
rs910266	0.83[CHB][hapmap]
rs9341811	0.83[CHB][hapmap]
rs9343978	0.83[CHB][hapmap]
rs9343986	0.80[ASN][1000 genomes]
rs9350847	0.86[CHB][hapmap]
rs9350854	0.83[ASN][1000 genomes]
rs9352803	0.83[CHB][hapmap]
rs9352806	0.82[CHB][hapmap]
rs9352809	0.83[CHB][hapmap]
rs9352817	0.82[CHB][hapmap]
rs9352826	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361600	0.83[EUR][1000 genomes]
rs9361608	0.80[ASN][1000 genomes]
rs978814	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv463907	chr6:81047559-81075912	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv604053	chr6:81047559-81075912	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv970303	chr6:81050335-81062570	Enhancers Weak transcription	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81029400-81079600	Weak transcription	HSMM	muscle
2	chr6:81033800-81070200	Weak transcription	Left Ventricle	heart
3	chr6:81048200-81066800	Weak transcription	Pancreas	Pancrea
4	chr6:81048400-81064200	Weak transcription	Liver	Liver
5	chr6:81050400-81071200	Weak transcription	Primary T cells from cord blood	blood
6	chr6:81051600-81059200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:81053600-81073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:81057200-81067200	Weak transcription	Fetal Lung	lung
9	chr6:81057400-81063600	Weak transcription	Fetal Heart	heart
10	chr6:81058400-81067000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:81058400-81071400	Weak transcription	Aorta	Aorta
12	chr6:81058400-81075800	Weak transcription	Psoas Muscle	Psoas

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