Variant report

Variant	rs9343986
Chromosome Location	chr6:81072201-81072202
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10455370	0.86[CHB][hapmap]
rs10755395	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10806190	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10943704	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12203572	0.80[ASN][1000 genomes]
rs12209683	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1436864	0.80[EUR][1000 genomes]
rs1572941	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1821781	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1935036	0.80[EUR][1000 genomes]
rs1984242	0.87[CHB][hapmap]
rs2322765	0.80[ASN][1000 genomes]
rs2322766	0.81[EUR][1000 genomes]
rs4706844	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6454155	0.81[EUR][1000 genomes]
rs6906078	1.00[ASN][1000 genomes]
rs6906638	1.00[ASN][1000 genomes]
rs6907135	1.00[ASN][1000 genomes]
rs6929517	1.00[ASN][1000 genomes]
rs7451797	0.80[EUR][1000 genomes]
rs7742251	0.80[EUR][1000 genomes]
rs7746229	0.80[EUR][1000 genomes]
rs7762895	0.80[ASN][1000 genomes]
rs9343988	0.82[EUR][1000 genomes]
rs9343989	0.80[EUR][1000 genomes]
rs9350851	0.80[ASN][1000 genomes]
rs9350854	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9350855	0.83[EUR][1000 genomes]
rs9350856	0.80[EUR][1000 genomes]
rs9352826	0.80[ASN][1000 genomes]
rs9359415	0.81[EUR][1000 genomes]
rs9359418	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9361608	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361609	0.83[EUR][1000 genomes]
rs9448941	0.81[EUR][1000 genomes]
rs9448942	0.81[EUR][1000 genomes]
rs9448943	0.82[EUR][1000 genomes]
rs9448944	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv463907	chr6:81047559-81075912	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv604053	chr6:81047559-81075912	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81029400-81079600	Weak transcription	HSMM	muscle
2	chr6:81053600-81073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:81058400-81075800	Weak transcription	Psoas Muscle	Psoas
4	chr6:81065200-81072800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:81067600-81075800	Weak transcription	Ovary	ovary
6	chr6:81068200-81073000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:81069200-81073400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:81069200-81074000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:81069200-81079800	Weak transcription	Pancreas	Pancrea
10	chr6:81070200-81073400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:81072000-81074600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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