Variant report

Variant	rs10947462
Chromosome Location	chr6:11606109-11606110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:11605385-11606154	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr6:11605502-11611239	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
ENSG00000271897	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10456423	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10947437	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12195523	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12198735	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12215876	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs295065	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58773927	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6911969	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73357895	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9469572	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9469574	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9469589	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11593800-11609800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:11597400-11606600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:11599800-11606600	Weak transcription	Fetal Intestine Large	intestine
4	chr6:11600800-11606400	Weak transcription	Aorta	Aorta
5	chr6:11602800-11609200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:11602800-11609800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:11603000-11606600	Weak transcription	Esophagus	oesophagus
8	chr6:11603000-11606600	Weak transcription	Spleen	Spleen
9	chr6:11603000-11609200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:11603000-11609400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:11603400-11606400	Weak transcription	A549	lung
12	chr6:11603400-11607400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:11603800-11609200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:11604400-11606200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:11604400-11606200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:11604400-11606200	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr6:11604600-11606600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:11604600-11607600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:11604600-11608000	Enhancers	Left Ventricle	heart
20	chr6:11604600-11608400	Enhancers	Brain Germinal Matrix	brain
21	chr6:11604800-11607600	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr6:11604800-11608800	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr6:11605200-11607000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:11605200-11607600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:11605200-11608200	Enhancers	Adipose Nuclei	Adipose
26	chr6:11605400-11606200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:11605400-11606400	Enhancers	Fetal Brain Female	brain
28	chr6:11605400-11606400	Enhancers	Stomach Smooth Muscle	stomach
29	chr6:11605400-11606400	Enhancers	HSMMtube	muscle
30	chr6:11605400-11606800	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr6:11605400-11606800	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr6:11605400-11607600	Enhancers	Fetal Heart	heart
33	chr6:11605400-11607800	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr6:11605400-11608000	Enhancers	Brain Hippocampus Middle	brain
35	chr6:11605400-11608000	Enhancers	Placenta	Placenta
36	chr6:11605400-11608200	Enhancers	Fetal Muscle Leg	muscle
37	chr6:11605400-11608200	Enhancers	Right Atrium	heart
38	chr6:11605400-11608400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:11605400-11608400	Enhancers	Fetal Stomach	stomach
40	chr6:11605400-11608400	Enhancers	NHLF	lung
41	chr6:11605400-11608600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:11605400-11608600	Enhancers	Fetal Brain Male	brain
43	chr6:11605400-11610400	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr6:11605600-11606400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:11605600-11606800	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr6:11605600-11606800	Weak transcription	Fetal Muscle Trunk	muscle
47	chr6:11605600-11607600	Enhancers	Fetal Intestine Small	intestine
48	chr6:11605600-11607800	Enhancers	Psoas Muscle	Psoas
49	chr6:11605600-11607800	Enhancers	HSMM	muscle
50	chr6:11605600-11608000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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