Variant report

Variant	rs9469572
Chromosome Location	chr6:11590035-11590036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11585369..11588205-chr6:11589273..11592735,3	MCF-7	breast:
2	chr6:11589569..11591448-chr6:12289511..12291212,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078401	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10456073	0.82[CHB][hapmap]
rs10456423	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10947437	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10947462	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12194504	0.82[CHB][hapmap]
rs12195523	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12198735	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12215876	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs295065	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58773927	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907207	0.89[CHB][hapmap]
rs6911969	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73357895	0.87[EUR][1000 genomes]
rs9469574	0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469589	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11586200-11591200	Enhancers	NHLF	lung
2	chr6:11587000-11592400	Weak transcription	Liver	Liver
3	chr6:11587200-11590400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:11587200-11590400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:11587200-11592600	Weak transcription	Ovary	ovary
6	chr6:11587200-11593000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:11587400-11591000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:11587400-11592200	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:11587400-11592400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:11587400-11592600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:11587400-11592800	Weak transcription	Placenta	Placenta
12	chr6:11587400-11593600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:11587600-11592800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:11588600-11591000	Weak transcription	Aorta	Aorta
15	chr6:11589400-11590400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:11589400-11590600	Enhancers	Placenta Amnion	Placenta Amnion
17	chr6:11589400-11590800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:11589400-11591200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:11589400-11591200	Enhancers	HUVEC	blood vessel
20	chr6:11589400-11591200	Enhancers	NH-A	brain
21	chr6:11589400-11591200	Enhancers	NHDF-Ad	bronchial
22	chr6:11589400-11591200	Enhancers	Osteobl	bone
23	chr6:11589400-11591400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:11589600-11590200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:11589600-11590800	Enhancers	A549	lung
26	chr6:11589800-11590200	Flanking Active TSS	HSMMtube	muscle
27	chr6:11589800-11591000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:11589800-11591200	Enhancers	Fetal Lung	lung
29	chr6:11589800-11591200	Enhancers	Fetal Stomach	stomach
30	chr6:11590000-11590600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:11590000-11590600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr6:11590000-11591200	Enhancers	HSMM	muscle

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