Variant report

Variant	rs12198735
Chromosome Location	chr6:11604678-11604679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr6:11604565-11604892	HUVEC	blood vessel:	n/a	chr6:11604648-11604657 chr6:11604641-11604662 chr6:11604643-11604657 chr6:11604647-11604657

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11603395..11605168-chr6:11610638..11612350,2	K562	blood:

Variant related genes	Relation type
ENSG00000271897	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10456423	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10947437	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10947462	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12195523	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12215876	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs295065	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58773927	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6911969	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73357895	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9469572	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];0.87[TSI][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9469574	0.89[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9469589	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11593200-11605400	Weak transcription	Right Atrium	heart
2	chr6:11593800-11609800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:11597400-11606600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:11599800-11606600	Weak transcription	Fetal Intestine Large	intestine
5	chr6:11600000-11605400	Weak transcription	Placenta	Placenta
6	chr6:11600000-11605400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:11600800-11606400	Weak transcription	Aorta	Aorta
8	chr6:11601000-11605400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:11601200-11605400	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:11601600-11605600	Weak transcription	Ovary	ovary
11	chr6:11602400-11604800	Strong transcription	HSMM	muscle
12	chr6:11602400-11605000	Strong transcription	HSMMtube	muscle
13	chr6:11602800-11605400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:11602800-11605600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:11602800-11609200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:11602800-11609800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:11603000-11605200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:11603000-11605400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:11603000-11606600	Weak transcription	Esophagus	oesophagus
20	chr6:11603000-11606600	Weak transcription	Spleen	Spleen
21	chr6:11603000-11609200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:11603000-11609400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr6:11603200-11605400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:11603200-11605600	Weak transcription	Fetal Intestine Small	intestine
25	chr6:11603400-11606400	Weak transcription	A549	lung
26	chr6:11603400-11607400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:11603800-11605600	Enhancers	HUVEC	blood vessel
28	chr6:11603800-11609200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:11604400-11606000	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr6:11604400-11606200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:11604400-11606200	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr6:11604400-11606200	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr6:11604600-11604800	Enhancers	Pancreas	Pancrea
34	chr6:11604600-11605800	Enhancers	Primary hematopoietic stem cells	blood
35	chr6:11604600-11605800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:11604600-11606600	Enhancers	Muscle Satellite Cultured Cells	--
37	chr6:11604600-11607600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:11604600-11608000	Enhancers	Left Ventricle	heart
39	chr6:11604600-11608400	Enhancers	Brain Germinal Matrix	brain

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