Variant report

Variant	rs10948865
Chromosome Location	chr6:54723952-54723953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:54718921..54722891-chr6:54723074..54726787,4	MCF-7	breast:
2	chr6:54596752..54599206-chr6:54723703..54726514,2	MCF-7	breast:
3	chr6:54721521..54725055-chr6:54731692..54735464,4	MCF-7	breast:
4	chr6:54582065..54584949-chr6:54722187..54724387,3	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10485135	1.00[EUR][1000 genomes]
rs10807486	0.83[AFR][1000 genomes]
rs10948871	1.00[EUR][1000 genomes]
rs11961881	1.00[EUR][1000 genomes]
rs11964483	1.00[EUR][1000 genomes]
rs1507112	1.00[EUR][1000 genomes]
rs16886234	1.00[EUR][1000 genomes]
rs16886244	1.00[EUR][1000 genomes]
rs16886248	1.00[EUR][1000 genomes]
rs16886267	1.00[EUR][1000 genomes]
rs2062780	1.00[EUR][1000 genomes]
rs2062781	1.00[EUR][1000 genomes]
rs55954156	1.00[EUR][1000 genomes]
rs56991726	1.00[EUR][1000 genomes]
rs57287621	1.00[EUR][1000 genomes]
rs58495896	1.00[EUR][1000 genomes]
rs60013096	1.00[EUR][1000 genomes]
rs60517516	1.00[EUR][1000 genomes]
rs61632434	1.00[EUR][1000 genomes]
rs6906651	1.00[EUR][1000 genomes]
rs73431481	1.00[EUR][1000 genomes]
rs73432338	1.00[EUR][1000 genomes]
rs73432360	1.00[EUR][1000 genomes]
rs73432383	1.00[EUR][1000 genomes]
rs73434410	1.00[EUR][1000 genomes]
rs73446382	1.00[EUR][1000 genomes]
rs73742853	0.83[AMR][1000 genomes]
rs73742854	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742861	1.00[EUR][1000 genomes]
rs73742862	1.00[EUR][1000 genomes]
rs73742869	1.00[EUR][1000 genomes]
rs7756856	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9296772	1.00[EUR][1000 genomes]
rs9464150	1.00[EUR][1000 genomes]
rs9464164	1.00[EUR][1000 genomes]
rs9464165	1.00[EUR][1000 genomes]
rs9464168	1.00[EUR][1000 genomes]
rs9464169	1.00[EUR][1000 genomes]
rs9464170	1.00[EUR][1000 genomes]
rs9475070	1.00[EUR][1000 genomes]
rs9475071	1.00[EUR][1000 genomes]
rs9475074	1.00[EUR][1000 genomes]
rs9475076	1.00[EUR][1000 genomes]
rs9475080	1.00[EUR][1000 genomes]
rs9475084	1.00[EUR][1000 genomes]
rs9475086	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54712600-54725000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:54713200-54725600	Weak transcription	Gastric	stomach
3	chr6:54713400-54726400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:54715400-54731200	Weak transcription	Hela-S3	cervix
5	chr6:54721200-54724000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:54721200-54724400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:54721200-54724400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:54721200-54724600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:54721200-54727000	Weak transcription	Fetal Kidney	kidney
10	chr6:54721200-54727000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:54721200-54730000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:54721400-54724200	Weak transcription	HMEC	breast
13	chr6:54721400-54724400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:54721400-54724800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:54721400-54725000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:54721400-54725200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr6:54721400-54726200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:54721600-54726400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:54722400-54724600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:54722400-54724800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:54722600-54724400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:54723000-54724200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:54723000-54725800	Weak transcription	Stomach Mucosa	stomach
24	chr6:54723000-54726000	Weak transcription	Fetal Intestine Large	intestine
25	chr6:54723200-54724200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr6:54723200-54724200	Weak transcription	NHEK	skin
27	chr6:54723800-54724400	Genic enhancers	Fetal Intestine Small	intestine

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