Variant report

Variant	rs73742861
Chromosome Location	chr6:54755388-54755389
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:54751952..54753804-chr6:54753869..54755428,2	MCF-7	breast:
2	chr6:54742187..54744014-chr6:54753985..54756805,2	MCF-7	breast:
3	chr6:54713425..54714965-chr6:54753003..54756000,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10485135	1.00[EUR][1000 genomes]
rs10948865	1.00[EUR][1000 genomes]
rs10948871	1.00[EUR][1000 genomes]
rs11961881	1.00[EUR][1000 genomes]
rs11964483	1.00[EUR][1000 genomes]
rs1507112	1.00[EUR][1000 genomes]
rs16886234	1.00[EUR][1000 genomes]
rs16886244	1.00[EUR][1000 genomes]
rs16886248	1.00[EUR][1000 genomes]
rs16886267	1.00[EUR][1000 genomes]
rs2062780	1.00[EUR][1000 genomes]
rs2062781	1.00[EUR][1000 genomes]
rs55954156	1.00[EUR][1000 genomes]
rs56991726	1.00[EUR][1000 genomes]
rs57287621	1.00[EUR][1000 genomes]
rs58495896	1.00[EUR][1000 genomes]
rs60013096	1.00[EUR][1000 genomes]
rs60517516	1.00[EUR][1000 genomes]
rs61632434	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906651	1.00[EUR][1000 genomes]
rs73431481	1.00[EUR][1000 genomes]
rs73432338	1.00[EUR][1000 genomes]
rs73432360	1.00[EUR][1000 genomes]
rs73432383	1.00[EUR][1000 genomes]
rs73434410	1.00[EUR][1000 genomes]
rs73446382	1.00[EUR][1000 genomes]
rs73742854	1.00[EUR][1000 genomes]
rs73742862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742869	1.00[EUR][1000 genomes]
rs7756856	1.00[EUR][1000 genomes]
rs9296772	1.00[EUR][1000 genomes]
rs9464150	1.00[EUR][1000 genomes]
rs9464164	1.00[EUR][1000 genomes]
rs9464165	1.00[EUR][1000 genomes]
rs9464168	1.00[EUR][1000 genomes]
rs9464169	1.00[EUR][1000 genomes]
rs9464170	1.00[EUR][1000 genomes]
rs9475070	1.00[EUR][1000 genomes]
rs9475071	1.00[EUR][1000 genomes]
rs9475074	1.00[EUR][1000 genomes]
rs9475076	1.00[EUR][1000 genomes]
rs9475080	1.00[EUR][1000 genomes]
rs9475084	1.00[EUR][1000 genomes]
rs9475086	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54737600-54755800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:54739800-54763000	Weak transcription	Small Intestine	intestine
3	chr6:54744200-54757600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:54744400-54761000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:54744800-54755800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:54746200-54755600	Weak transcription	HMEC	breast
7	chr6:54746400-54757800	Weak transcription	Hela-S3	cervix
8	chr6:54747600-54756000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:54752200-54759000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:54752400-54758600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:54754200-54755800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:54755200-54756600	Enhancers	NHEK	skin

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