Variant report

Variant	rs73446382
Chromosome Location	chr6:54707134-54707135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10485135	1.00[EUR][1000 genomes]
rs10807486	0.86[AFR][1000 genomes]
rs10948865	1.00[EUR][1000 genomes]
rs10948871	1.00[EUR][1000 genomes]
rs11961881	1.00[EUR][1000 genomes]
rs11964483	1.00[EUR][1000 genomes]
rs1507112	1.00[EUR][1000 genomes]
rs16886234	1.00[EUR][1000 genomes]
rs16886244	1.00[EUR][1000 genomes]
rs16886248	1.00[EUR][1000 genomes]
rs16886267	1.00[EUR][1000 genomes]
rs2062780	1.00[EUR][1000 genomes]
rs2062781	1.00[EUR][1000 genomes]
rs55954156	1.00[EUR][1000 genomes]
rs56991726	1.00[EUR][1000 genomes]
rs57287621	1.00[EUR][1000 genomes]
rs58495896	1.00[EUR][1000 genomes]
rs60013096	1.00[EUR][1000 genomes]
rs60517516	1.00[EUR][1000 genomes]
rs61632434	1.00[EUR][1000 genomes]
rs6906651	1.00[EUR][1000 genomes]
rs73431481	1.00[EUR][1000 genomes]
rs73432338	1.00[EUR][1000 genomes]
rs73432360	1.00[EUR][1000 genomes]
rs73432383	1.00[EUR][1000 genomes]
rs73434410	1.00[EUR][1000 genomes]
rs73742854	1.00[EUR][1000 genomes]
rs73742861	1.00[EUR][1000 genomes]
rs73742862	1.00[EUR][1000 genomes]
rs73742869	1.00[EUR][1000 genomes]
rs7756856	1.00[EUR][1000 genomes]
rs9296772	1.00[EUR][1000 genomes]
rs9464150	1.00[EUR][1000 genomes]
rs9464164	1.00[EUR][1000 genomes]
rs9464165	1.00[EUR][1000 genomes]
rs9464168	1.00[EUR][1000 genomes]
rs9464169	1.00[EUR][1000 genomes]
rs9464170	1.00[EUR][1000 genomes]
rs9475070	1.00[EUR][1000 genomes]
rs9475071	1.00[EUR][1000 genomes]
rs9475074	1.00[EUR][1000 genomes]
rs9475076	1.00[EUR][1000 genomes]
rs9475080	1.00[EUR][1000 genomes]
rs9475084	1.00[EUR][1000 genomes]
rs9475086	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54705000-54707200	Weak transcription	HMEC	breast
2	chr6:54706800-54707400	Enhancers	NHEK	skin
3	chr6:54707000-54707200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:54707000-54707400	Enhancers	Placenta	Placenta
5	chr6:54707000-54707800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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