Variant report

Variant	rs10949292
Chromosome Location	chr6:15309916-15309917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15305494..15307025-chr6:15307899..15310326,2	K562	blood:
2	chr6:15211374..15212897-chr6:15307612..15309960,2	K562	blood:
3	chr6:15300692..15302915-chr6:15309585..15311589,2	MCF-7	breast:
4	chr6:15309030..15310974-chr6:15337189..15339265,2	K562	blood:
5	chr6:15303140..15305494-chr6:15308085..15310163,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10949291	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10949293	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10949295	0.83[EUR][1000 genomes]
rs11759478	0.84[EUR][1000 genomes]
rs11759828	0.85[ASN][1000 genomes]
rs11759847	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12192599	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12198692	0.84[EUR][1000 genomes]
rs12198694	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12199895	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12201889	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12204124	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12205420	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12206745	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12209228	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12209453	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12209539	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12209748	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12210592	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12211777	0.84[EUR][1000 genomes]
rs12212013	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12214719	1.00[EUR][1000 genomes]
rs12215596	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12215740	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16876250	0.84[EUR][1000 genomes]
rs17619838	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17637773	0.83[EUR][1000 genomes]
rs17687211	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17713010	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55634912	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55980198	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6902997	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6919296	0.89[ASN][1000 genomes]
rs6935879	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6938919	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72834551	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72834590	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7765425	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15295800-15311400	Enhancers	Primary hematopoietic stem cells	blood
2	chr6:15300200-15312400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:15300400-15312600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:15300800-15310600	Weak transcription	HSMM	muscle
5	chr6:15301200-15312400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:15301200-15313000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:15301200-15313400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:15303400-15311400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:15303400-15311400	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:15303800-15310600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:15303800-15312600	Weak transcription	Lung	lung
12	chr6:15305200-15311000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:15305200-15313600	Weak transcription	Liver	Liver
14	chr6:15305400-15312600	Weak transcription	Fetal Brain Male	brain
15	chr6:15305600-15310600	Weak transcription	Gastric	stomach
16	chr6:15305600-15312600	Weak transcription	Fetal Brain Female	brain
17	chr6:15305800-15310000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:15305800-15310000	Weak transcription	Pancreas	Pancrea
19	chr6:15305800-15310600	Weak transcription	Esophagus	oesophagus
20	chr6:15306000-15310200	Weak transcription	Right Atrium	heart
21	chr6:15306000-15311800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr6:15306000-15318600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:15306200-15310000	Weak transcription	Stomach Mucosa	stomach
24	chr6:15306400-15310000	Weak transcription	Fetal Intestine Large	intestine
25	chr6:15306400-15310600	Weak transcription	Fetal Heart	heart
26	chr6:15306400-15312600	Weak transcription	Spleen	Spleen
27	chr6:15306600-15310000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr6:15306600-15312400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:15306600-15313000	Weak transcription	Fetal Muscle Leg	muscle
30	chr6:15307000-15310000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:15307000-15314800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:15307400-15310200	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr6:15307400-15310200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:15307400-15311000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:15307400-15311000	Enhancers	Brain Anterior Caudate	brain
36	chr6:15307400-15314400	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr6:15307600-15310400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:15307600-15310600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:15307600-15310600	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr6:15307600-15311000	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr6:15307600-15311200	Enhancers	Brain Cingulate Gyrus	brain
42	chr6:15307600-15311400	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr6:15307600-15311600	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr6:15307600-15314000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:15307800-15310000	Weak transcription	Right Ventricle	heart
46	chr6:15307800-15310200	Weak transcription	Left Ventricle	heart
47	chr6:15307800-15310600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:15307800-15311000	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr6:15308000-15310200	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr6:15308000-15310200	Enhancers	Fetal Kidney	kidney

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