Variant report

Variant	rs6919296
Chromosome Location	chr6:15334092-15334093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15325585..15327552-chr6:15333592..15336004,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10949291	0.89[ASN][1000 genomes]
rs10949292	0.89[ASN][1000 genomes]
rs10949293	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10949294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs10949295	1.00[CHB][hapmap]
rs11753952	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11759040	1.00[JPT][hapmap]
rs11759478	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs11759828	0.85[ASN][1000 genomes]
rs11759847	0.85[ASN][1000 genomes]
rs12192599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12198692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12198694	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12199895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12201889	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs12204124	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12205420	0.85[ASN][1000 genomes]
rs12206745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12209228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12209453	0.85[ASN][1000 genomes]
rs12209539	0.89[ASN][1000 genomes]
rs12209748	0.94[ASN][1000 genomes]
rs12210592	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12211278	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs12211777	0.82[EUR][1000 genomes]
rs12212013	0.94[ASN][1000 genomes]
rs12215596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12215740	0.94[ASN][1000 genomes]
rs13192347	1.00[CHB][hapmap]
rs13194410	1.00[CHB][hapmap]
rs13205396	1.00[CHB][hapmap]
rs13205612	1.00[CHB][hapmap]
rs16876250	0.82[EUR][1000 genomes]
rs16876278	1.00[CHB][hapmap]
rs17575737	1.00[CHB][hapmap]
rs17576233	1.00[CHB][hapmap]
rs17576436	1.00[CHB][hapmap]
rs17619730	1.00[JPT][hapmap]
rs17619838	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17637773	1.00[CHB][hapmap]
rs17638192	1.00[CHB][hapmap]
rs17687211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17713010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs55634912	0.94[ASN][1000 genomes]
rs55980198	0.94[ASN][1000 genomes]
rs6902997	0.85[ASN][1000 genomes]
rs6935879	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938919	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs72834551	0.89[ASN][1000 genomes]
rs72834590	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7765425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv538144	chr6:15310696-15364984	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15319400-15335800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:15323800-15337000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:15324800-15339800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:15327800-15335600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:15327800-15337200	Weak transcription	Pancreas	Pancrea
6	chr6:15327800-15375800	Weak transcription	Aorta	Aorta
7	chr6:15328000-15337400	Weak transcription	Stomach Mucosa	stomach
8	chr6:15328000-15340200	Weak transcription	Esophagus	oesophagus
9	chr6:15328000-15342000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr6:15328200-15340800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:15328600-15334400	Enhancers	Fetal Lung	lung
12	chr6:15328600-15334600	Enhancers	Brain Germinal Matrix	brain
13	chr6:15329200-15334800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:15329200-15335400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:15329200-15341000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:15329800-15343600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:15330000-15340400	Weak transcription	Fetal Intestine Small	intestine
18	chr6:15330200-15335800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:15330200-15337200	Weak transcription	Brain Angular Gyrus	brain
20	chr6:15330600-15337000	Weak transcription	Adipose Nuclei	Adipose
21	chr6:15330600-15337000	Weak transcription	Fetal Heart	heart
22	chr6:15330600-15337000	Weak transcription	Right Atrium	heart
23	chr6:15330600-15340200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:15330600-15340400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr6:15330800-15335400	Weak transcription	Right Ventricle	heart
26	chr6:15330800-15337000	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr6:15330800-15348800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:15331000-15336200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:15331200-15339200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:15331400-15336600	Weak transcription	Brain Substantia Nigra	brain
31	chr6:15331400-15336600	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:15331400-15337000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:15331400-15340800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:15331400-15341600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:15331600-15334200	Weak transcription	K562	blood
36	chr6:15331600-15334400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr6:15331600-15335600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr6:15331600-15337000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:15331600-15338600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:15331600-15345400	Weak transcription	Ovary	ovary
41	chr6:15331600-15346000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:15331600-15347000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:15331800-15337400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:15331800-15339400	Weak transcription	Dnd41	blood
45	chr6:15331800-15340400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:15331800-15340600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:15331800-15340800	Weak transcription	NHEK	skin
48	chr6:15332000-15335400	Weak transcription	Primary T cells from cord blood	blood
49	chr6:15332000-15335400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:15332000-15335800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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