Variant report

Variant	rs72834551
Chromosome Location	chr6:15299839-15299840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15278983..15281973-chr6:15299059..15301860,2	K562	blood:
2	chr6:15298447..15300545-chr6:15342591..15344623,2	K562	blood:
3	chr6:15264475..15267087-chr6:15298287..15299928,2	K562	blood:
4	chr6:15245473..15252079-chr6:15297257..15300680,10	K562	blood:
5	chr6:15246258..15249740-chr6:15297448..15300680,7	K562	blood:
6	chr6:15250579..15252953-chr6:15298506..15301463,2	K562	blood:
7	chr6:15284333..15285955-chr6:15298459..15300664,2	K562	blood:
8	chr6:15253059..15254782-chr6:15298383..15301127,2	K562	blood:
9	chr6:15211281..15212832-chr6:15299599..15301469,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction
ENSG00000235488	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10949291	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10949292	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10949293	0.85[ASN][1000 genomes]
rs10949295	0.85[AMR][1000 genomes]
rs11751391	0.81[ASN][1000 genomes]
rs11759040	0.81[ASN][1000 genomes]
rs11759828	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11759847	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12192599	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12198694	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12199895	0.85[ASN][1000 genomes]
rs12201889	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12204124	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12205420	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12206745	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209228	0.95[ASN][1000 genomes]
rs12209453	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12209539	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209748	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12210592	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12212013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12214719	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12215596	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12215740	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17575737	0.85[AMR][1000 genomes]
rs17619730	0.81[ASN][1000 genomes]
rs17619838	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17637773	0.85[AMR][1000 genomes]
rs17687211	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17713010	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28505073	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55634912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55980198	0.95[ASN][1000 genomes]
rs6902997	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6919296	0.89[ASN][1000 genomes]
rs6935879	0.89[ASN][1000 genomes]
rs6938919	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72834590	0.93[AMR][1000 genomes]
rs7765425	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv601006	chr6:15275305-15300590	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15281800-15300200	Weak transcription	Fetal Stomach	stomach
2	chr6:15290200-15300400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:15290600-15309400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:15292000-15303600	Weak transcription	Ovary	ovary
5	chr6:15293000-15301200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr6:15293000-15302800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:15293600-15302000	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:15294000-15301800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:15294000-15303400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:15294200-15302200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr6:15294400-15300200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:15294400-15303600	Weak transcription	Brain Germinal Matrix	brain
13	chr6:15295000-15300000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:15295000-15303400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:15295000-15305600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:15295800-15301000	Enhancers	Fetal Thymus	thymus
17	chr6:15295800-15311400	Enhancers	Primary hematopoietic stem cells	blood
18	chr6:15296000-15301000	Enhancers	Primary T cells fromperipheralblood	blood
19	chr6:15296000-15301000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr6:15296000-15301600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:15296000-15302200	Enhancers	Primary B cells from cord blood	blood
22	chr6:15296000-15302400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:15296000-15302800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:15296200-15301600	Enhancers	Primary T cells from cord blood	blood
25	chr6:15296200-15301800	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr6:15296600-15300800	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr6:15296600-15301000	Enhancers	Left Ventricle	heart
28	chr6:15296600-15303400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:15296600-15305200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr6:15296800-15300200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:15296800-15300600	Enhancers	Adipose Nuclei	Adipose
32	chr6:15297000-15301600	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr6:15297400-15301800	Enhancers	Small Intestine	intestine
34	chr6:15297800-15301800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr6:15297800-15302400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:15298000-15300400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr6:15298000-15300800	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr6:15298000-15300800	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr6:15298000-15302400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:15298200-15300800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:15298200-15301000	Enhancers	Brain Hippocampus Middle	brain
42	chr6:15298200-15302000	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr6:15298200-15302400	Enhancers	Muscle Satellite Cultured Cells	--
44	chr6:15298400-15300000	Weak transcription	Fetal Heart	heart
45	chr6:15298400-15301200	Enhancers	Psoas Muscle	Psoas
46	chr6:15298400-15301200	Enhancers	Right Atrium	heart
47	chr6:15298400-15302200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:15298400-15302200	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr6:15298600-15300600	Weak transcription	Fetal Lung	lung
50	chr6:15298600-15301000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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