Variant report

Variant	rs6938919
Chromosome Location	chr6:15322581-15322582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15197204..15198861-chr6:15320773..15322728,2	MCF-7	breast:
2	chr6:15317056..15319341-chr6:15321670..15323644,3	K562	blood:
3	chr6:15321161..15324088-chr6:15325760..15327373,2	K562	blood:
4	chr6:15320928..15323607-chr6:15325318..15329724,5	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10949291	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10949292	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10949293	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10949295	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11753952	0.81[AMR][1000 genomes]
rs11759040	1.00[JPT][hapmap]
rs11759478	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11759828	0.80[ASN][1000 genomes]
rs11759847	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12192599	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12198692	0.82[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12198694	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12199895	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12201889	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12204124	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12205420	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12206745	0.82[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12209228	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12209453	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12209539	0.85[ASN][1000 genomes]
rs12209748	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12210592	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12211777	0.84[EUR][1000 genomes]
rs12212013	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12214719	1.00[EUR][1000 genomes]
rs12215596	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12215740	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16876250	0.84[EUR][1000 genomes]
rs17575737	1.00[CEU][hapmap]
rs17619730	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs17619838	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17637773	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17687211	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17713010	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55634912	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55980198	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6902997	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6919296	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6935879	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72834551	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72834590	0.84[EUR][1000 genomes]
rs7765425	1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv538144	chr6:15310696-15364984	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15311200-15330600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:15313200-15322800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:15313200-15323400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:15313200-15326600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:15313400-15322600	Weak transcription	Osteobl	bone
6	chr6:15313600-15322800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:15313800-15325400	Weak transcription	Liver	Liver
8	chr6:15314000-15323800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:15314200-15324000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:15314200-15326600	Weak transcription	Ovary	ovary
11	chr6:15314400-15327600	Weak transcription	Aorta	Aorta
12	chr6:15314600-15322600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:15315000-15322600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:15315400-15323200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:15315600-15323400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:15317200-15323600	Enhancers	Primary hematopoietic stem cells	blood
17	chr6:15317400-15323600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:15318000-15323800	Enhancers	K562	blood
19	chr6:15318200-15323600	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr6:15318200-15326600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr6:15318600-15322800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:15318600-15326400	Weak transcription	Spleen	Spleen
23	chr6:15318800-15323000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr6:15318800-15323800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr6:15319000-15322800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:15319000-15323200	Weak transcription	Esophagus	oesophagus
27	chr6:15319000-15323400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:15319000-15325800	Weak transcription	Adipose Nuclei	Adipose
29	chr6:15319000-15327600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:15319000-15328600	Weak transcription	HSMM	muscle
31	chr6:15319200-15323200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:15319200-15323200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:15319200-15323400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:15319200-15326800	Weak transcription	Right Atrium	heart
35	chr6:15319200-15327000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr6:15319200-15327000	Weak transcription	Fetal Brain Female	brain
37	chr6:15319200-15328000	Weak transcription	Fetal Stomach	stomach
38	chr6:15319200-15329000	Weak transcription	Fetal Muscle Leg	muscle
39	chr6:15319400-15323000	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr6:15319400-15323400	Weak transcription	Brain Angular Gyrus	brain
41	chr6:15319400-15323400	Weak transcription	HSMMtube	muscle
42	chr6:15319400-15335800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:15319600-15326800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr6:15319800-15322600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr6:15319800-15323200	Weak transcription	Brain Anterior Caudate	brain
46	chr6:15319800-15323400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:15319800-15323400	Weak transcription	Lung	lung
48	chr6:15319800-15326400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr6:15319800-15326600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr6:15319800-15327200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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