Variant report

Variant	rs11759040
Chromosome Location	chr6:15268260-15268261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15266698..15269191-chr6:15273161..15275404,3	K562	blood:
2	chr6:15267883..15270425-chr6:15297715..15299571,2	K562	blood:
3	chr6:15266109..15268889-chr6:15271443..15273014,2	K562	blood:
4	chr6:15210394..15212835-chr6:15267234..15269130,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10949291	0.81[ASN][1000 genomes]
rs11751391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755759	0.85[AMR][1000 genomes]
rs12192599	1.00[JPT][hapmap]
rs12193844	0.87[AMR][1000 genomes]
rs12198692	1.00[JPT][hapmap]
rs12198694	1.00[JPT][hapmap]
rs12199895	1.00[JPT][hapmap]
rs12204124	1.00[JPT][hapmap]
rs12206745	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12209228	1.00[JPT][hapmap]
rs12209539	0.81[ASN][1000 genomes]
rs12210592	1.00[JPT][hapmap]
rs12215596	1.00[JPT][hapmap]
rs17619730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17619838	1.00[JPT][hapmap]
rs17687211	1.00[JPT][hapmap]
rs17713010	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs28505073	0.95[ASN][1000 genomes]
rs62397308	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62397310	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6919296	1.00[JPT][hapmap]
rs6938919	1.00[JPT][hapmap]
rs72834551	0.81[ASN][1000 genomes]
rs7765425	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15251200-15279400	Weak transcription	A549	lung
2	chr6:15253200-15269600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr6:15254200-15269600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:15254800-15269800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:15257800-15270000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:15258200-15268600	Enhancers	NHDF-Ad	bronchial
7	chr6:15258800-15268800	Weak transcription	Aorta	Aorta
8	chr6:15258800-15270400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:15261000-15283800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:15261200-15275000	Weak transcription	HMEC	breast
11	chr6:15261600-15270000	Enhancers	Primary T cells fromperipheralblood	blood
12	chr6:15261600-15270600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:15262400-15270200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr6:15262600-15269600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:15262800-15270000	Enhancers	Fetal Thymus	thymus
16	chr6:15262800-15270000	Enhancers	Spleen	Spleen
17	chr6:15262800-15270200	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr6:15262800-15271200	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:15263000-15269000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:15263000-15269400	Enhancers	Psoas Muscle	Psoas
21	chr6:15263000-15269600	Enhancers	Right Ventricle	heart
22	chr6:15263000-15270200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr6:15263000-15271400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:15263200-15268400	Enhancers	Adipose Nuclei	Adipose
25	chr6:15263200-15269800	Enhancers	Left Ventricle	heart
26	chr6:15263200-15270000	Enhancers	Fetal Muscle Leg	muscle
27	chr6:15263200-15270200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:15264000-15269400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:15264000-15269800	Enhancers	Gastric	stomach
30	chr6:15264200-15268800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr6:15264200-15269400	Enhancers	NH-A	brain
32	chr6:15264200-15269800	Enhancers	Fetal Lung	lung
33	chr6:15264200-15270000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr6:15264200-15270000	Enhancers	Fetal Stomach	stomach
35	chr6:15264200-15270200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr6:15264200-15270200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr6:15264200-15270200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr6:15264200-15270200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:15264200-15270200	Enhancers	Fetal Heart	heart
40	chr6:15264200-15270600	Enhancers	Ovary	ovary
41	chr6:15264200-15272800	Enhancers	Brain Angular Gyrus	brain
42	chr6:15264400-15268600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:15264400-15269800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:15264400-15269800	Enhancers	Fetal Brain Male	brain
45	chr6:15264400-15271000	Enhancers	Stomach Mucosa	stomach
46	chr6:15264600-15268400	Enhancers	Small Intestine	intestine
47	chr6:15264600-15268800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
48	chr6:15264800-15271000	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr6:15265000-15269600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr6:15265200-15268400	Enhancers	Liver	Liver

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