Variant report

Variant	rs13205612
Chromosome Location	chr6:15369898-15369899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15354695..15356559-chr6:15368589..15371076,2	K562	blood:
2	chr6:15368688..15371011-chr6:15378246..15381226,2	K562	blood:
3	chr6:15365360..15367491-chr6:15367726..15369982,3	K562	blood:
4	chr6:15367895..15370188-chr6:15378246..15381166,2	K562	blood:
5	chr6:15368801..15370843-chr6:15397622..15400552,2	K562	blood:
6	chr6:15350348..15351999-chr6:15369721..15371306,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10484355	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10949294	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10949295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11756544	1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11757415	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11759478	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12192599	1.00[CHB][hapmap]
rs12198692	1.00[CHB][hapmap]
rs12198694	1.00[CHB][hapmap]
rs12199895	1.00[CHB][hapmap]
rs12201889	1.00[CHB][hapmap]
rs12206745	1.00[CHB][hapmap]
rs12209228	1.00[CHB][hapmap]
rs12211278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12215596	1.00[CHB][hapmap]
rs13192347	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194410	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13195950	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13205396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208486	1.00[CEU][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13214720	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16876278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16876354	1.00[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17468929	0.86[CEU][hapmap]
rs17575737	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17576233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17576436	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17576710	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17619838	1.00[CHB][hapmap]
rs17637773	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17638192	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17638720	0.88[CEU][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17687211	1.00[CHB][hapmap]
rs17713010	1.00[CHB][hapmap]
rs2237146	1.00[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2299051	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2299057	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34002211	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34764533	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35047303	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35139070	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35364784	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35629999	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35734069	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35918625	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56123857	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56265026	0.83[ASN][1000 genomes]
rs61296041	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66478504	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919296	1.00[CHB][hapmap]
rs6941859	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72836327	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs742102	1.00[JPT][hapmap]
rs7747437	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7765425	1.00[CHB][hapmap]
rs7767966	0.88[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1019927	chr6:15351240-15419257	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv538145	chr6:15351240-15419257	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15327800-15375800	Weak transcription	Aorta	Aorta
2	chr6:15341800-15378400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:15352000-15370000	Weak transcription	Lung	lung
4	chr6:15360400-15372400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:15360600-15371400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:15361200-15370000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:15362200-15372200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:15362600-15372400	Enhancers	Fetal Lung	lung
9	chr6:15363000-15371600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:15364400-15372000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:15364600-15390200	Weak transcription	HepG2	liver
12	chr6:15365000-15402800	Weak transcription	Dnd41	blood
13	chr6:15365200-15371400	Weak transcription	Fetal Intestine Small	intestine
14	chr6:15365800-15372200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:15365800-15372400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:15365800-15374400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:15365800-15374400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:15365800-15378600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:15365800-15384800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:15366200-15372200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:15366400-15371000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:15366400-15382600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:15366600-15370000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:15366600-15370200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:15366600-15372200	Enhancers	Brain Hippocampus Middle	brain
26	chr6:15366600-15372400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:15366600-15373600	Weak transcription	HSMMtube	muscle
28	chr6:15366600-15374400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:15366600-15375800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:15366600-15376000	Weak transcription	Osteobl	bone
31	chr6:15366600-15377200	Weak transcription	Stomach Mucosa	stomach
32	chr6:15366600-15378600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:15366600-15384800	Weak transcription	NH-A	brain
34	chr6:15366600-15385000	Weak transcription	Fetal Brain Female	brain
35	chr6:15366800-15372400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:15367000-15370000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:15367000-15370000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:15367000-15370000	Weak transcription	NHLF	lung
39	chr6:15367000-15371400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr6:15367000-15373800	Weak transcription	HSMM	muscle
41	chr6:15367000-15375200	Weak transcription	Fetal Muscle Leg	muscle
42	chr6:15367000-15376200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:15367000-15379200	Weak transcription	Brain Germinal Matrix	brain
44	chr6:15367000-15384800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr6:15367200-15370800	Weak transcription	Fetal Stomach	stomach
46	chr6:15367200-15375200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:15367400-15370000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:15367400-15370000	Weak transcription	Gastric	stomach
49	chr6:15367400-15370000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:15367400-15370000	Weak transcription	HMEC	breast

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