Variant report

Variant	rs2237146
Chromosome Location	chr6:15417235-15417236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15417100..15419181-chr6:15441212..15443490,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10484355	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10949294	1.00[JPT][hapmap]
rs10949295	1.00[JPT][hapmap]
rs11756544	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[ASN][1000 genomes]
rs11757415	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11759478	0.88[JPT][hapmap]
rs12211278	1.00[JPT][hapmap]
rs13192347	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13194410	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13195950	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs13205396	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13205612	1.00[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13208486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13214720	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16876278	1.00[JPT][hapmap]
rs16876354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468929	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs17575737	0.86[JPT][hapmap]
rs17576233	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17576436	0.88[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17576710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17637773	1.00[JPT][hapmap]
rs17638192	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17638720	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2299051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299057	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34002211	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34764533	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35047303	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35139070	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35364784	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35629999	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35734069	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35918625	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56123857	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61296041	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66478504	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6941859	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72836327	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742102	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7747437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7767966	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1019927	chr6:15351240-15419257	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv538145	chr6:15351240-15419257	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15401200-15426200	Weak transcription	Pancreas	Pancrea
2	chr6:15403000-15422000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:15404600-15420800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:15404600-15421200	Weak transcription	Spleen	Spleen
5	chr6:15404800-15417800	Weak transcription	NH-A	brain
6	chr6:15404800-15427600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:15404800-15429000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:15405200-15418600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:15405600-15422000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:15405800-15421200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:15409200-15426200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:15410600-15422000	Weak transcription	Gastric	stomach
13	chr6:15412200-15421600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:15412400-15418000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:15412400-15418800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:15412600-15417400	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr6:15412800-15418200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:15413000-15418000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:15413000-15420800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:15413600-15418200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:15413600-15421200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:15414200-15417600	Weak transcription	Left Ventricle	heart
23	chr6:15414200-15421000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:15414200-15421000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:15414200-15421200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr6:15414200-15422000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:15414200-15422000	Weak transcription	Right Ventricle	heart
28	chr6:15414200-15427200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:15414200-15427400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:15414200-15429200	Weak transcription	HSMM	muscle
31	chr6:15414400-15417400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:15414400-15418400	Weak transcription	Adipose Nuclei	Adipose
33	chr6:15414400-15420000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr6:15414600-15419600	Weak transcription	Fetal Kidney	kidney
35	chr6:15414600-15420800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:15414600-15427800	Weak transcription	Fetal Brain Male	brain
37	chr6:15414800-15417600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr6:15414800-15418600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:15414800-15419000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:15414800-15419600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:15415000-15417600	Weak transcription	Fetal Stomach	stomach
42	chr6:15415000-15418400	Weak transcription	Brain Substantia Nigra	brain
43	chr6:15415000-15418600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:15415000-15419000	Weak transcription	Fetal Lung	lung
45	chr6:15415000-15419600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:15415000-15419600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:15415000-15421200	Weak transcription	Psoas Muscle	Psoas
48	chr6:15415000-15422200	Weak transcription	Brain Hippocampus Middle	brain
49	chr6:15415400-15420400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
50	chr6:15415600-15423400	Weak transcription	Right Atrium	heart

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