Variant report

Variant	rs7747437
Chromosome Location	chr6:15424956-15424957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15410616..15413310-chr6:15424661..15426461,2	MCF-7	breast:
2	chr6:15424021..15426137-chr6:15433751..15436727,2	K562	blood:
3	chr6:15424279..15427255-chr6:15429243..15432157,3	K562	blood:
4	chr6:15422447..15425279-chr6:15425487..15427798,3	K562	blood:
5	chr6:15424906..15426863-chr6:15428621..15431301,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10484355	1.00[CEU][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10949294	1.00[JPT][hapmap]
rs10949295	1.00[JPT][hapmap]
rs11756544	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11757415	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11759478	0.88[JPT][hapmap]
rs12211278	1.00[JPT][hapmap]
rs13192347	0.89[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13194410	0.89[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13195950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13205396	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13205612	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13208486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13214720	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16876278	1.00[JPT][hapmap]
rs16876354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17468929	0.88[CEU][hapmap]
rs17575737	0.86[JPT][hapmap]
rs17576233	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17576436	0.88[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17576710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17637773	1.00[JPT][hapmap]
rs17638192	0.89[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17638720	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2237146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2299051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2299057	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34002211	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34764533	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35047303	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35139070	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35364784	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35629999	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35734069	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35918625	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56123857	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61296041	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66478504	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6941859	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72836327	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs742102	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7767966	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15401200-15426200	Weak transcription	Pancreas	Pancrea
2	chr6:15404800-15427600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:15404800-15429000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:15409200-15426200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:15414200-15427200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:15414200-15427400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:15414200-15429200	Weak transcription	HSMM	muscle
8	chr6:15414600-15427800	Weak transcription	Fetal Brain Male	brain
9	chr6:15417000-15452200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:15417800-15426800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:15420400-15425600	Weak transcription	NHEK	skin
12	chr6:15420400-15427400	Weak transcription	K562	blood
13	chr6:15420600-15426400	Weak transcription	HepG2	liver
14	chr6:15421200-15425200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:15421200-15427000	Weak transcription	Liver	Liver
16	chr6:15421200-15427600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:15421400-15426000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:15421400-15426800	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:15421400-15427400	Weak transcription	Brain Germinal Matrix	brain
20	chr6:15421400-15427400	Weak transcription	Fetal Intestine Small	intestine
21	chr6:15421400-15432400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:15421600-15426200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:15421600-15427200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:15421600-15429600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:15421600-15430800	Weak transcription	Aorta	Aorta
26	chr6:15422000-15425200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:15422200-15426000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:15422400-15425200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:15422400-15430200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:15422800-15425200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:15422800-15426000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:15422800-15426000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:15422800-15426000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:15422800-15426600	Weak transcription	Fetal Lung	lung
35	chr6:15422800-15427400	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr6:15422800-15430800	Weak transcription	Gastric	stomach
37	chr6:15422800-15433400	Weak transcription	Colonic Mucosa	Colon
38	chr6:15423000-15426200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr6:15423000-15426200	Weak transcription	Brain Angular Gyrus	brain
40	chr6:15423000-15427200	Weak transcription	Small Intestine	intestine
41	chr6:15423000-15427800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr6:15423000-15427800	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr6:15423000-15429200	Weak transcription	Stomach Mucosa	stomach
44	chr6:15423200-15425800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:15423200-15426800	Weak transcription	Colon Smooth Muscle	Colon
46	chr6:15423200-15427000	Genic enhancers	HUES6 Cell Line	embryonic stem cell
47	chr6:15423400-15425000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr6:15423400-15426400	Weak transcription	Brain Substantia Nigra	brain
49	chr6:15423400-15427400	Weak transcription	Thymus	Thymus
50	chr6:15423400-15427600	Weak transcription	Fetal Kidney	kidney

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