Variant report

Variant	rs56123857
Chromosome Location	chr6:15433983-15433984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15424021..15426137-chr6:15433751..15436727,2	K562	blood:
2	chr6:15432414..15437643-chr6:15439715..15443191,6	K562	blood:
3	chr6:15428361..15431112-chr6:15432614..15434598,3	K562	blood:
4	chr6:15431887..15434138-chr6:16210419..16213214,2	K562	blood:
5	chr6:14883074..14885637-chr6:15431868..15434468,2	K562	blood:
6	chr6:15433530..15436747-chr6:15439990..15443191,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10484355	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11756544	0.95[ASN][1000 genomes]
rs11757415	0.95[ASN][1000 genomes]
rs13192347	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13194410	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13195950	0.95[ASN][1000 genomes]
rs13205396	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13205612	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13208486	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13214720	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16876354	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468929	0.80[EUR][1000 genomes]
rs17576233	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17576436	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17576710	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17638192	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17638720	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2237146	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299051	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299057	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34002211	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34764533	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35047303	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35139070	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35364784	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35629999	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35734069	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35918625	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61296041	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66478504	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6941859	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72836327	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747437	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7767966	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15417000-15452200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:15424600-15442000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:15425600-15445400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:15425800-15437800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:15426000-15434000	Enhancers	Brain Cingulate Gyrus	brain
6	chr6:15426000-15435000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:15426000-15441000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:15426400-15440400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:15426400-15442000	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:15426600-15434400	Enhancers	Fetal Lung	lung
11	chr6:15426800-15434800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:15427000-15450800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:15428000-15435200	Enhancers	Brain Hippocampus Middle	brain
14	chr6:15428000-15441800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:15428400-15436600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr6:15428400-15437400	Weak transcription	Dnd41	blood
17	chr6:15428800-15441600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr6:15429000-15435000	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr6:15429000-15435000	Enhancers	Brain Substantia Nigra	brain
20	chr6:15429200-15434000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:15429200-15434000	Enhancers	Osteobl	bone
22	chr6:15429200-15434200	Enhancers	Right Ventricle	heart
23	chr6:15429200-15434400	Enhancers	HSMMtube	muscle
24	chr6:15429200-15446000	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr6:15429400-15434000	Enhancers	Fetal Intestine Small	intestine
26	chr6:15429400-15435800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:15429600-15434000	Enhancers	Brain Angular Gyrus	brain
28	chr6:15429600-15434000	Enhancers	Fetal Muscle Leg	muscle
29	chr6:15429600-15434000	Enhancers	Right Atrium	heart
30	chr6:15430000-15434800	Enhancers	Adipose Nuclei	Adipose
31	chr6:15430000-15434800	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr6:15430200-15435000	Enhancers	HSMM	muscle
33	chr6:15430200-15439600	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr6:15430200-15439600	Weak transcription	NHLF	lung
35	chr6:15430400-15434000	Enhancers	Colon Smooth Muscle	Colon
36	chr6:15430800-15434000	Enhancers	Lung	lung
37	chr6:15430800-15434200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr6:15430800-15435000	Enhancers	Small Intestine	intestine
39	chr6:15430800-15440800	Enhancers	H1 Cell Line	embryonic stem cell
40	chr6:15430800-15441000	Enhancers	H9 Cell Line	embryonic stem cell
41	chr6:15430800-15441600	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr6:15431000-15434000	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr6:15431000-15441600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr6:15431200-15435200	Enhancers	K562	blood
45	chr6:15431400-15434800	Enhancers	Fetal Thymus	thymus
46	chr6:15431400-15435000	Enhancers	Rectal Smooth Muscle	rectum
47	chr6:15431600-15434400	Enhancers	Spleen	Spleen
48	chr6:15431600-15434800	Enhancers	Placenta	Placenta
49	chr6:15431600-15435400	Enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr6:15431800-15435000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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