Variant report

Variant	rs10949962
Chromosome Location	chr7:64506843-64506844
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 158 )
Associated
traits (count: 47 )

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10234467	0.92[CEU][hapmap]
rs10237971	0.83[EUR][1000 genomes]
rs1060383	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10949955	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10949959	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10949961	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10949963	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10949964	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10949966	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11760504	0.81[EUR][1000 genomes]
rs11762549	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763475	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11764690	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11764811	0.81[EUR][1000 genomes]
rs11767448	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769801	0.80[EUR][1000 genomes]
rs11771269	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11771279	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11978852	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12530729	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12530733	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12533804	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12535805	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12537116	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12537120	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12537219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538992	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12665875	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12666841	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12666885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12669596	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12670240	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12671632	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13222578	0.83[EUR][1000 genomes]
rs13223327	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs13226629	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13229762	0.82[EUR][1000 genomes]
rs13231853	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232826	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13234869	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13239892	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13243536	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13244300	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13245077	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13245081	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1540833	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1830014	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1852026	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1917393	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2049440	0.87[ASN][1000 genomes]
rs2091224	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2103146	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2103148	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs2419256	0.89[CEU][hapmap]
rs2419281	0.89[CEU][hapmap]
rs28510371	0.83[EUR][1000 genomes]
rs28877001	0.92[CEU][hapmap]
rs2900858	0.96[CEU][hapmap]
rs34079274	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34171289	0.81[EUR][1000 genomes]
rs34198302	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34346758	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34362307	0.81[EUR][1000 genomes]
rs34438629	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34739196	0.96[CEU][hapmap];0.88[YRI][hapmap]
rs35189858	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35281840	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35513558	0.96[CEU][hapmap]
rs35578542	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35586133	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35679667	0.83[EUR][1000 genomes]
rs35794351	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35924077	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35953728	0.81[AMR][1000 genomes]
rs3807068	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3807069	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3823471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3982216	0.85[EUR][1000 genomes]
rs4302728	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4451193	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4499978	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4717235	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4717236	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4717238	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718154	0.81[CHB][hapmap]
rs4718177	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718178	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4718180	0.92[CEU][hapmap]
rs4718187	0.81[EUR][1000 genomes]
rs4718188	0.89[CEU][hapmap]
rs495336	0.92[CEU][hapmap]
rs5001356	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55778450	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56009162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56303509	0.81[EUR][1000 genomes]
rs58134413	0.81[EUR][1000 genomes]
rs593619	0.92[CEU][hapmap]
rs594456	0.96[CEU][hapmap]
rs62455989	0.84[EUR][1000 genomes]
rs6460216	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6460230	0.96[CEU][hapmap];0.86[CHB][hapmap]
rs657560	0.92[CEU][hapmap]
rs658360	0.92[CEU][hapmap]
rs673957	0.92[CEU][hapmap]
rs67529730	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6950807	0.82[EUR][1000 genomes]
rs6954275	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6959094	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6965753	0.85[EUR][1000 genomes]
rs6968439	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71562951	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71562952	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71562953	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73141327	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73141358	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7383888	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7777724	0.82[CHB][hapmap]
rs7780100	0.92[CEU][hapmap]
rs7787674	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7789394	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7792874	0.92[CEU][hapmap]
rs7796077	0.92[CEU][hapmap]
rs7799516	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs7800787	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7801355	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7803542	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7806567	0.89[CEU][hapmap]
rs7807855	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7811163	0.82[CHB][hapmap]
rs7811966	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs867630	0.82[CHB][hapmap]
rs9638216	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9770631	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv888276	chr7:63990100-64511564	Strong transcription ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv1022042	chr7:64226499-64566945	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv888282	chr7:64299645-64511564	Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	esv3506582	chr7:64323055-64563984	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3506583	chr7:64323055-64563984	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv1019180	chr7:64329889-64512842	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv888283	chr7:64343985-64511564	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
11	esv2752165	chr7:64345822-65208605	Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
12	nsv888284	chr7:64406439-64562139	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
13	nsv1033517	chr7:64443052-64942418	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
14	nsv538893	chr7:64443052-64942418	Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
15	nsv1034625	chr7:64456197-64850413	Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
16	nsv1019089	chr7:64456197-64874187	Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
17	nsv1023699	chr7:64456197-64942418	Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
18	nsv517778	chr7:64462326-65326821	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
19	nsv429767	chr7:64473713-65415647	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
20	nsv917231	chr7:64478253-65300317	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
21	esv34341	chr7:64478386-65012082	Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
22	esv2752166	chr7:64478386-65208605	Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
23	nsv1029796	chr7:64494934-65302696	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
24	nsv916005	chr7:64499811-65012082	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
25	nsv533081	chr7:64499945-65208605	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:47)

SNP	Gene	Cis/trans	Tissue	Source
rs10949962	RP11-460N20.5	cis	Artery Tibial	GTEx
rs10949962	ERV3-1	cis	Artery Tibial	GTEx
rs10949962	RP11-797H7.3	cis	Skin Sun Exposed Lower leg	GTEx
rs10949962	RP11-797H7.3	cis	Thyroid	GTEx
rs10949962	SEPHS1P1	cis	Thyroid	GTEx
rs10949962	INTS4L1	cis	Nerve Tibial	GTEx
rs10949962	ERV3-1	cis	Artery Aorta	GTEx
rs10949962	RP11-460N20.5	cis	Whole Blood	GTEx
rs10949962	AC104057.1	cis	Adipose Subcutaneous	GTEx
rs10949962	CCT6P3	cis	Esophagus Mucosa	GTEx
rs10949962	RP11-667F9.1	cis	Nerve Tibial	GTEx
rs10949962	RP11-460N20.5	cis	Artery Aorta	GTEx
rs10949962	INTS4L1	cis	Adipose Subcutaneous	GTEx
rs10949962	RP11-797H7.3	cis	Adipose Subcutaneous	GTEx
rs10949962	RP11-460N20.4	cis	lung	GTEx
rs10949962	RP11-667F9.1	cis	Adipose Subcutaneous	GTEx
rs10949962	ZNF273	cis	lung	GTEx
rs10949962	RP11-460N20.5	cis	Esophagus Mucosa	GTEx
rs10949962	RP11-460N20.5	cis	lung	GTEx
rs10949962	RP11-460N20.4	cis	Adipose Subcutaneous	GTEx
rs10949962	RP11-460N20.5	cis	Esophagus Muscularis	GTEx
rs10949962	INTS4L1	cis	Stomach	GTEx
rs10949962	INTS4L1	cis	Skin Sun Exposed Lower leg	GTEx
rs10949962	RP11-460N20.5	cis	Thyroid	GTEx
rs10949962	CCT6P3	cis	Skin Sun Exposed Lower leg	GTEx
rs10949962	RP11-797H7.5	cis	Nerve Tibial	GTEx
rs10949962	RP11-797H7.3	cis	Artery Tibial	GTEx
rs10949962	CCT6P3	cis	Artery Tibial	GTEx
rs10949962	CCT6P3	cis	Adipose Subcutaneous	GTEx
rs10949962	RP11-797H7.5	cis	lung	GTEx
rs10949962	RP11-797H7.3	cis	Nerve Tibial	GTEx
rs10949962	INTS4L1	cis	Esophagus Muscularis	GTEx
rs10949962	CCT6P3	cis	lung	GTEx
rs10949962	RP11-460N20.5	cis	Nerve Tibial	GTEx
rs10949962	RP11-460N20.4	cis	Esophagus Mucosa	GTEx
rs10949962	CCT6P3	cis	Whole Blood	GTEx
rs10949962	RP11-460N20.5	cis	Adipose Subcutaneous	GTEx
rs10949962	RP11-667F9.1	cis	Artery Aorta	GTEx
rs10949962	RP11-797H7.5	cis	Heart Left Ventricle	GTEx
rs10949962	RP11-797H7.5	cis	Thyroid	GTEx
rs10949962	ERV3	cis	multi-tissue	Pritchard
rs10949962	RP11-460N20.4	cis	Esophagus Muscularis	GTEx
rs10949962	RP11-667F9.1	cis	lung	GTEx
rs10949962	CCT6P3	cis	Nerve Tibial	GTEx
rs10949962	RP11-460N20.4	cis	Artery Tibial	GTEx
rs10949962	SEPHS1P1	cis	Nerve Tibial	GTEx
rs10949962	RP11-797H7.5	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64499600-64517400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr7:64499600-64531200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:64499600-64531400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:64499600-64541000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:64499800-64522200	Weak transcription	Left Ventricle	heart
6	chr7:64499800-64526600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr7:64499800-64529600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:64499800-64531200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:64499800-64541000	Weak transcription	Lung	lung
10	chr7:64499800-64541000	Weak transcription	Ovary	ovary
11	chr7:64500000-64510800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:64500000-64531400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr7:64500000-64540200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr7:64500000-64541000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:64500200-64507400	Weak transcription	Osteobl	bone
16	chr7:64500200-64509600	Weak transcription	Fetal Brain Female	brain
17	chr7:64500200-64514400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:64500200-64531200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:64500200-64541000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:64500200-64541000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr7:64500200-64541000	Weak transcription	NH-A	brain
22	chr7:64500400-64507000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr7:64500400-64507400	Weak transcription	Fetal Intestine Large	intestine
24	chr7:64500400-64509600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr7:64500400-64516600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:64500400-64522000	Weak transcription	Brain Hippocampus Middle	brain
27	chr7:64500400-64526600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:64500400-64529400	Weak transcription	Thymus	Thymus
29	chr7:64500400-64531200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:64500400-64531400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:64500400-64531400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:64500400-64531400	Weak transcription	Fetal Lung	lung
33	chr7:64500400-64533800	Weak transcription	NHEK	skin
34	chr7:64500400-64541000	Weak transcription	Brain Germinal Matrix	brain
35	chr7:64500400-64541000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr7:64500600-64507400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:64500600-64510800	Weak transcription	A549	lung
38	chr7:64500600-64512400	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr7:64500600-64515200	Weak transcription	Primary B cells from cord blood	blood
40	chr7:64500600-64516800	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr7:64500600-64517600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr7:64500600-64529000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr7:64500600-64531400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr7:64500600-64541000	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr7:64500600-64541000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:64500600-64541000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr7:64500600-64541000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr7:64500600-64541000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr7:64500600-64541000	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr7:64500600-64541000	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links