Variant report

Variant	rs10953595
Chromosome Location	chr7:108766065-108766066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10244150	0.97[ASN][1000 genomes]
rs10953594	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1404586	0.94[ASN][1000 genomes]
rs1525037	0.93[ASN][1000 genomes]
rs1581541	0.88[ASN][1000 genomes]
rs4236587	0.97[ASN][1000 genomes]
rs4595060	0.94[ASN][1000 genomes]
rs7801461	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831091	chr7:108756218-108923644	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1018586	chr7:108759240-109034145	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv429794	chr7:108763098-109003574	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108752600-108766800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:108762400-108769400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:108762600-108766400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:108762600-108766800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:108764800-108768200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:108765200-108767600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:108765200-108769800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:108765400-108767800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:108765400-108768200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:108765800-108767600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr7:108765800-108769800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:108766000-108769600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:108766000-108769800	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links