Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10225252	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10227370	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10244150	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10272130	0.81[ASN][1000 genomes]
rs10275557	0.81[ASN][1000 genomes]
rs10953594	0.89[ASN][1000 genomes]
rs10953595	0.88[ASN][1000 genomes]
rs11770410	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1404584	0.81[ASN][1000 genomes]
rs1404585	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1404586	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1525023	0.83[ASN][1000 genomes]
rs1525037	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2030738	0.85[ASN][1000 genomes]
rs2030739	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2030741	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4143238	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4236587	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4595060	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6970149	0.84[ASN][1000 genomes]
rs7782995	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7801461	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831091	chr7:108756218-108923644	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1018586	chr7:108759240-109034145	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv429794	chr7:108763098-109003574	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1581541	CBLL1	cis	parietal	SCAN
rs1581541	LAMB4	cis	parietal	SCAN
rs1581541	TMEM168	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108752600-108766800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:108761400-108765400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:108762200-108766000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:108762400-108769400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:108762600-108765800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:108762600-108766400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:108762600-108766800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:108764800-108765800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:108764800-108768200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:108765200-108767600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:108765200-108769800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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