Variant report

Variant	rs1404586
Chromosome Location	chr7:108760710-108760711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10227370	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10244150	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10953594	0.97[ASN][1000 genomes]
rs10953595	0.94[ASN][1000 genomes]
rs1404584	0.80[EUR][1000 genomes]
rs1525037	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1581541	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2030738	0.81[ASN][1000 genomes]
rs2030739	0.91[EUR][1000 genomes]
rs2030741	0.90[EUR][1000 genomes]
rs4143238	0.83[EUR][1000 genomes]
rs4236587	0.97[ASN][1000 genomes]
rs4595060	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7782995	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7801461	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831091	chr7:108756218-108923644	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1018586	chr7:108759240-109034145	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108752600-108766800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:108760200-108764200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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