Variant report
| Variant | rs4143238 |
|---|---|
| Chromosome Location | chr7:108757705-108757706 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10225252 | 0.83[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10227370 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10244150 | 0.83[EUR][1000 genomes] |
| rs10272130 | 0.98[ASN][1000 genomes] |
| rs10275557 | 0.98[ASN][1000 genomes] |
| rs11770410 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1404584 | 0.98[ASN][1000 genomes] |
| rs1404585 | 0.82[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1404586 | 0.83[EUR][1000 genomes] |
| rs1525023 | 0.98[ASN][1000 genomes] |
| rs1525037 | 0.94[EUR][1000 genomes] |
| rs1581541 | 0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2030738 | 0.98[ASN][1000 genomes] |
| rs2030739 | 0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2030741 | 0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4595060 | 0.81[EUR][1000 genomes] |
| rs6948286 | 0.90[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6970149 | 0.99[ASN][1000 genomes] |
| rs7782995 | 0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831091 | chr7:108756218-108923644 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4143238 | CBLL1 | cis | parietal | SCAN |
| rs4143238 | TMEM168 | cis | parietal | SCAN |
| rs4143238 | LAMB4 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:108752600-108766800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
