Variant report

Variant	rs10244150
Chromosome Location	chr7:108763098-108763099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10227370	0.83[EUR][1000 genomes]
rs10953594	1.00[ASN][1000 genomes]
rs10953595	0.97[ASN][1000 genomes]
rs1404586	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1525037	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1581541	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4143238	0.83[EUR][1000 genomes]
rs4236587	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4595060	0.97[ASN][1000 genomes]
rs7801461	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831091	chr7:108756218-108923644	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1018586	chr7:108759240-109034145	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv429794	chr7:108763098-109003574	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10244150	TMEM168	cis	parietal	SCAN
rs10244150	LAMB4	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108752600-108766800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:108760200-108764200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:108760800-108763200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:108761400-108765400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:108762200-108766000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:108762400-108763200	Enhancers	Fetal Lung	lung
7	chr7:108762400-108763600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr7:108762400-108769400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:108762600-108765800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr7:108762600-108766400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:108762600-108766800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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