Variant report

Variant	rs10953833
Chromosome Location	chr7:116642238-116642239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11760206	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11762090	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4282507	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6951094	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6959421	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6961972	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9641573	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9770475	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9969267	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv527321	chr7:116635048-116660803	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116613600-116647000	Weak transcription	Right Atrium	heart
2	chr7:116627800-116648200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:116627800-116648800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:116632600-116649000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:116635600-116654800	Weak transcription	Psoas Muscle	Psoas
6	chr7:116635800-116660200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:116638600-116644000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:116638600-116647400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:116639200-116647200	Weak transcription	Right Ventricle	heart
10	chr7:116639400-116644800	Weak transcription	NH-A	brain
11	chr7:116639600-116644800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:116639600-116647000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr7:116639600-116647600	Weak transcription	Colon Smooth Muscle	Colon
14	chr7:116639800-116644600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr7:116639800-116660000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:116640800-116643600	Weak transcription	Pancreas	Pancrea
17	chr7:116641400-116646200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr7:116641800-116643800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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