Variant report

Variant	rs9641573
Chromosome Location	chr7:116637999-116638000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116637852..116640358-chr7:116641000..116643196,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10953833	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11760206	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11762090	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4282507	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4509243	0.80[AFR][1000 genomes]
rs4730767	0.82[AMR][1000 genomes]
rs6951094	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6959421	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6961972	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9770475	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9969267	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv527321	chr7:116635048-116660803	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116597000-116641600	Weak transcription	Ovary	ovary
2	chr7:116610600-116638800	Weak transcription	Hela-S3	cervix
3	chr7:116613600-116647000	Weak transcription	Right Atrium	heart
4	chr7:116627600-116639000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:116627800-116638000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:116627800-116648200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:116627800-116648800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:116631600-116640600	Weak transcription	K562	blood
9	chr7:116632600-116638000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:116632600-116638000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:116632600-116649000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:116632800-116638000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:116635600-116639000	Weak transcription	Colon Smooth Muscle	Colon
14	chr7:116635600-116654800	Weak transcription	Psoas Muscle	Psoas
15	chr7:116635800-116638000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:116635800-116638000	Weak transcription	Right Ventricle	heart
17	chr7:116635800-116640600	Weak transcription	Fetal Heart	heart
18	chr7:116635800-116640600	Weak transcription	Pancreas	Pancrea
19	chr7:116635800-116660200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:116637000-116638200	Weak transcription	Placenta Amnion	Placenta Amnion

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