Variant report
| Variant | rs10955223 |
|---|---|
| Chromosome Location | chr8:100915682-100915683 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:100915649..100917743-chr8:100919387..100921014,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1130474 | 0.85[ASN][1000 genomes] |
| rs1130569 | 0.81[ASN][1000 genomes] |
| rs12544943 | 0.98[ASN][1000 genomes] |
| rs12547260 | 0.86[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12548542 | 0.82[ASN][1000 genomes] |
| rs12548840 | 0.82[ASN][1000 genomes] |
| rs13252579 | 0.98[ASN][1000 genomes] |
| rs13253073 | 0.98[ASN][1000 genomes] |
| rs13259051 | 0.82[ASN][1000 genomes] |
| rs13259066 | 0.95[ASN][1000 genomes] |
| rs13277184 | 0.86[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs13280341 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs34029308 | 1.00[ASN][1000 genomes] |
| rs35745659 | 0.92[ASN][1000 genomes] |
| rs35935983 | 0.97[ASN][1000 genomes] |
| rs62534633 | 0.84[ASN][1000 genomes] |
| rs7015733 | 0.85[ASN][1000 genomes] |
| rs7812991 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033944 | chr8:100737321-100916345 | Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv1830910 | chr8:100791156-101114794 | Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:100913600-100916200 | Weak transcription | Placenta | Placenta |
