Variant report
| Variant | rs13280341 |
|---|---|
| Chromosome Location | chr8:100921068-100921069 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000164919 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10955222 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10955223 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1130474 | 0.84[ASN][1000 genomes] |
| rs1130569 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1135382 | 0.94[CHB][hapmap];0.82[JPT][hapmap] |
| rs12544943 | 1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs12547260 | 0.85[ASN][1000 genomes] |
| rs12548542 | 0.84[ASN][1000 genomes] |
| rs12548840 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs13252579 | 1.00[ASN][1000 genomes] |
| rs13253073 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs13259051 | 0.84[ASN][1000 genomes] |
| rs13259066 | 0.97[ASN][1000 genomes] |
| rs13277184 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs2305290 | 0.94[CHB][hapmap];0.82[JPT][hapmap] |
| rs34029308 | 0.98[ASN][1000 genomes] |
| rs35745659 | 0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs35935983 | 0.98[ASN][1000 genomes] |
| rs4409375 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4480092 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4510829 | 0.87[CHB][hapmap] |
| rs4626565 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs62534633 | 0.85[ASN][1000 genomes] |
| rs6468694 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7015733 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs7157 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7812991 | 0.85[ASN][1000 genomes] |
| rs7828241 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7840626 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7844439 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1830910 | chr8:100791156-101114794 | Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
