Variant report

Variant	rs35935983
Chromosome Location	chr8:100901194-100901195
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:100894212..100902877-chr8:100903652..100908826,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164919	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10955222	0.87[EUR][1000 genomes]
rs10955223	0.97[ASN][1000 genomes]
rs1130474	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1130569	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12541837	0.82[EUR][1000 genomes]
rs12544943	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12547260	0.84[ASN][1000 genomes]
rs12548542	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12548840	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13252579	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13253073	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13259051	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13259066	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13264726	0.86[EUR][1000 genomes]
rs13273257	0.86[EUR][1000 genomes]
rs13277184	0.84[ASN][1000 genomes]
rs13280341	0.98[ASN][1000 genomes]
rs2305290	0.83[EUR][1000 genomes]
rs34029308	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35745659	0.92[ASN][1000 genomes]
rs4076509	0.86[EUR][1000 genomes]
rs4409375	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4480092	0.88[EUR][1000 genomes]
rs62534633	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6468694	0.82[EUR][1000 genomes]
rs6986006	0.82[EUR][1000 genomes]
rs7015733	0.83[ASN][1000 genomes]
rs7812991	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033944	chr8:100737321-100916345	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1830910	chr8:100791156-101114794	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100846400-100903800	Weak transcription	Stomach Mucosa	stomach
2	chr8:100872800-100903800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr8:100883200-100901800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:100883600-100903200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:100883800-100901600	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:100883800-100903200	Strong transcription	Duodenum Mucosa	Duodenum
7	chr8:100884400-100904800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:100885200-100903800	Weak transcription	Esophagus	oesophagus
9	chr8:100885600-100904800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr8:100886800-100904000	Weak transcription	Right Ventricle	heart
11	chr8:100886800-100904800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:100889400-100904800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:100890800-100904000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:100891400-100904200	Weak transcription	Colonic Mucosa	Colon
15	chr8:100892400-100903400	Weak transcription	Gastric	stomach
16	chr8:100893600-100901400	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:100893800-100903200	Strong transcription	Liver	Liver
18	chr8:100894000-100903600	Strong transcription	Placenta	Placenta
19	chr8:100894000-100903800	Strong transcription	K562	blood
20	chr8:100894400-100902600	Strong transcription	Primary B cells from peripheral blood	blood
21	chr8:100894600-100901400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:100894600-100903800	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr8:100894600-100904000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr8:100895000-100901400	Strong transcription	Adipose Nuclei	Adipose
25	chr8:100895000-100901800	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr8:100895000-100903600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:100895200-100901600	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr8:100895200-100903600	Strong transcription	Fetal Intestine Large	intestine
29	chr8:100895400-100901400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr8:100895400-100901800	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr8:100895400-100903200	Strong transcription	Fetal Thymus	thymus
32	chr8:100895600-100901400	Strong transcription	Primary B cells from cord blood	blood
33	chr8:100895600-100901800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr8:100896000-100903600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr8:100896000-100903800	Weak transcription	Aorta	Aorta
36	chr8:100896400-100902400	Strong transcription	Dnd41	blood
37	chr8:100896400-100903800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr8:100896400-100904000	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr8:100896400-100904200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr8:100896600-100902600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr8:100896600-100902600	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr8:100896600-100903800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr8:100897000-100904000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:100897200-100902800	Strong transcription	NHEK	skin
45	chr8:100897200-100903800	Strong transcription	Fetal Muscle Leg	muscle
46	chr8:100897400-100901400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr8:100897400-100902600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr8:100897400-100903400	Weak transcription	Colon Smooth Muscle	Colon
49	chr8:100897600-100901400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr8:100897600-100901400	Strong transcription	Fetal Brain Female	brain

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