Variant report

Variant	rs34029308
Chromosome Location	chr8:100904653-100904654
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:100904036..100906374-chr8:101015983..101018100,2	MCF-7	breast:
2	chr8:99954936..99956657-chr8:100904324..100906629,2	MCF-7	breast:
3	chr8:100884579..100893900-chr8:100903048..100907419,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271930	Chromatin interaction
ENSG00000164920	Chromatin interaction
ENSG00000212414	Chromatin interaction
ENSG00000104375	Chromatin interaction
ENSG00000164919	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10955222	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10955223	1.00[ASN][1000 genomes]
rs1130474	0.85[ASN][1000 genomes]
rs1130569	0.81[ASN][1000 genomes]
rs12541837	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12544943	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12547260	0.84[ASN][1000 genomes]
rs12548542	0.82[ASN][1000 genomes]
rs12548827	0.81[AMR][1000 genomes]
rs12548840	0.82[ASN][1000 genomes]
rs13252579	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13253073	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13259051	0.82[ASN][1000 genomes]
rs13259066	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13264726	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13273257	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13277184	0.84[ASN][1000 genomes]
rs13280341	0.98[ASN][1000 genomes]
rs2305290	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35745659	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35935983	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4076509	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4409375	0.89[EUR][1000 genomes]
rs4480092	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62534633	0.84[ASN][1000 genomes]
rs6468694	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6986006	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7015733	0.85[ASN][1000 genomes]
rs7812991	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033944	chr8:100737321-100916345	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1830910	chr8:100791156-101114794	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100884400-100904800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:100885600-100904800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:100886800-100904800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:100889400-100904800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:100902000-100904800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:100902600-100904800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:100903400-100906200	Active TSS	GM12878-XiMat	blood
8	chr8:100903800-100904800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:100903800-100904800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:100903800-100904800	Enhancers	Small Intestine	intestine
11	chr8:100903800-100904800	Enhancers	Stomach Mucosa	stomach
12	chr8:100903800-100905000	Enhancers	Spleen	Spleen
13	chr8:100903800-100905200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:100903800-100905200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr8:100903800-100905200	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr8:100903800-100905400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr8:100903800-100906200	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr8:100904000-100904800	Enhancers	Primary B cells from peripheral blood	blood
19	chr8:100904000-100904800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr8:100904000-100904800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr8:100904000-100904800	Enhancers	Fetal Thymus	thymus
22	chr8:100904000-100904800	Enhancers	Pancreas	Pancrea
23	chr8:100904000-100905000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr8:100904000-100905000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr8:100904000-100905000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:100904000-100905000	Flanking Active TSS	Brain Angular Gyrus	brain
27	chr8:100904000-100905000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
28	chr8:100904000-100905000	Flanking Active TSS	Stomach Smooth Muscle	stomach
29	chr8:100904000-100905000	Flanking Active TSS	Hela-S3	cervix
30	chr8:100904000-100905200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr8:100904000-100905200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
32	chr8:100904000-100905200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr8:100904000-100905400	Flanking Active TSS	Primary T cells from cord blood	blood
34	chr8:100904000-100906400	Active TSS	Ovary	ovary
35	chr8:100904000-100906400	Active TSS	Right Atrium	heart
36	chr8:100904000-100906400	Active TSS	Right Ventricle	heart
37	chr8:100904000-100906400	Active TSS	NHDF-Ad	bronchial
38	chr8:100904200-100904800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr8:100904200-100904800	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr8:100904200-100904800	Flanking Active TSS	Brain Germinal Matrix	brain
41	chr8:100904200-100904800	Flanking Active TSS	Fetal Intestine Small	intestine
42	chr8:100904200-100904800	Enhancers	Placenta	Placenta
43	chr8:100904200-100904800	Flanking Active TSS	Fetal Stomach	stomach
44	chr8:100904200-100904800	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon
45	chr8:100904200-100905000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
46	chr8:100904200-100905000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr8:100904200-100905000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr8:100904200-100905000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr8:100904200-100905000	Flanking Active TSS	Brain Anterior Caudate	brain
50	chr8:100904200-100905000	Flanking Active TSS	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links