Variant report

Variant	rs10958576
Chromosome Location	chr8:39808382-39808383
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12156204	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12542808	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12547737	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12677574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13248917	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13250800	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13262270	0.84[EUR][1000 genomes]
rs13270068	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13272828	0.80[ASN][1000 genomes]
rs13278237	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1541619	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1549048	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1861904	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1971046	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3927941	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4388451	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4737149	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56747975	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs950911	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39797800-39808400	Weak transcription	Fetal Lung	lung
2	chr8:39797800-39808800	Weak transcription	Left Ventricle	heart
3	chr8:39802800-39808800	Weak transcription	Lung	lung
4	chr8:39803400-39809200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr8:39804400-39809200	Enhancers	Primary B cells from peripheral blood	blood
6	chr8:39805000-39809800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr8:39805400-39810200	Enhancers	Primary hematopoietic stem cells	blood
8	chr8:39805600-39808600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:39805600-39809200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:39806000-39817000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:39806200-39810000	Active TSS	Liver	Liver
12	chr8:39807000-39809400	Weak transcription	A549	lung
13	chr8:39807200-39809000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr8:39807600-39808800	Weak transcription	K562	blood
15	chr8:39807600-39809000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:39807600-39809000	Enhancers	GM12878-XiMat	blood
17	chr8:39807600-39809600	Enhancers	Primary B cells from cord blood	blood
18	chr8:39807800-39808400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
19	chr8:39807800-39808400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr8:39807800-39808600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:39807800-39809200	Enhancers	Placenta	Placenta
22	chr8:39808000-39808800	Enhancers	H9 Cell Line	embryonic stem cell
23	chr8:39808000-39808800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:39808200-39808800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr8:39808200-39809800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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