Variant report

Variant	rs3927941
Chromosome Location	chr8:39805797-39805798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:39805766-39805965	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
IDO2	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10958576	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12156204	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12542808	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12547737	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12677574	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13248917	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13250800	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13262270	0.88[EUR][1000 genomes]
rs13270068	0.91[EUR][1000 genomes]
rs13278237	0.92[EUR][1000 genomes]
rs1541619	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1549048	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1861904	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1971046	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4388451	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4737149	0.92[EUR][1000 genomes]
rs56747975	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs950911	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39785600-39805800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:39796600-39806200	Weak transcription	Small Intestine	intestine
3	chr8:39797800-39805800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:39797800-39808400	Weak transcription	Fetal Lung	lung
5	chr8:39797800-39808800	Weak transcription	Left Ventricle	heart
6	chr8:39801200-39805800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr8:39802800-39808800	Weak transcription	Lung	lung
8	chr8:39803400-39809200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr8:39804400-39806200	Weak transcription	K562	blood
10	chr8:39804400-39809200	Enhancers	Primary B cells from peripheral blood	blood
11	chr8:39805000-39805800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr8:39805000-39807200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr8:39805000-39809800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr8:39805400-39806400	Enhancers	Primary B cells from cord blood	blood
15	chr8:39805400-39806800	Enhancers	H9 Cell Line	embryonic stem cell
16	chr8:39805400-39810200	Enhancers	Primary hematopoietic stem cells	blood
17	chr8:39805600-39805800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr8:39805600-39806200	Enhancers	A549	lung
19	chr8:39805600-39807200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:39805600-39807600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr8:39805600-39807600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr8:39805600-39807800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:39805600-39808000	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr8:39805600-39808200	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr8:39805600-39808600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr8:39805600-39809200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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