Variant report

Variant	rs12156204
Chromosome Location	chr8:39798066-39798067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10958576	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12542808	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12547737	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12677574	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13248917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13250800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13262270	0.93[EUR][1000 genomes]
rs13263777	0.84[EUR][1000 genomes]
rs13270068	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13272828	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13278237	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1541619	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1549048	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1861904	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1971046	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2300662	1.00[YRI][hapmap]
rs3927941	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4388451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737149	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56747975	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72612137	0.81[ASN][1000 genomes]
rs950911	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39785600-39805800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:39793400-39798600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:39794400-39801600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:39796600-39806200	Weak transcription	Small Intestine	intestine
5	chr8:39797000-39798200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr8:39797200-39798200	Enhancers	Hela-S3	cervix
7	chr8:39797400-39798200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:39797600-39798200	Flanking Active TSS	A549	lung
9	chr8:39797800-39798200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:39797800-39798200	Enhancers	HUVEC	blood vessel
11	chr8:39797800-39798400	Enhancers	Primary B cells from peripheral blood	blood
12	chr8:39797800-39798400	Enhancers	K562	blood
13	chr8:39797800-39798600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr8:39797800-39798800	Enhancers	Primary hematopoietic stem cells	blood
15	chr8:39797800-39799000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:39797800-39799400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr8:39797800-39799600	Weak transcription	Right Atrium	heart
18	chr8:39797800-39800000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr8:39797800-39800600	Weak transcription	Primary B cells from cord blood	blood
20	chr8:39797800-39802200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr8:39797800-39802400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr8:39797800-39802800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr8:39797800-39803000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr8:39797800-39805800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr8:39797800-39808400	Weak transcription	Fetal Lung	lung
26	chr8:39797800-39808800	Weak transcription	Left Ventricle	heart
27	chr8:39798000-39798200	Enhancers	Duodenum Mucosa	Duodenum
28	chr8:39798000-39798400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:39798000-39799000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr8:39798000-39800600	Weak transcription	GM12878-XiMat	blood
31	chr8:39798000-39801400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr8:39798000-39805600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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