Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10958576	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12156204	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12542808	0.87[EUR][1000 genomes]
rs12547737	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12677574	0.87[EUR][1000 genomes]
rs13248917	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13250800	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13262270	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13263777	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13270068	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1541619	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1549048	0.85[EUR][1000 genomes]
rs1861904	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1971046	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2300662	1.00[YRI][hapmap]
rs3927941	0.92[CEU][hapmap];0.87[JPT][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs4388451	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4737149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56747975	0.85[EUR][1000 genomes]
rs950911	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39771600-39797200	Weak transcription	Right Atrium	heart
2	chr8:39785600-39805800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:39788200-39793800	Weak transcription	K562	blood
4	chr8:39792000-39793400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr8:39792400-39797400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:39792600-39793800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:39792600-39795400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:39792600-39796400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:39792800-39794000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:39792800-39794400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:39792800-39795400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr8:39792800-39795400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:39793000-39794400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr8:39793200-39793600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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