Variant report

Variant	rs10963462
Chromosome Location	chr9:18130036-18130037
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10963471	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10963479	0.84[AMR][1000 genomes]
rs10963484	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10963485	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10963511	0.82[AMR][1000 genomes]
rs10963512	0.82[AMR][1000 genomes]
rs10963513	0.82[AMR][1000 genomes]
rs10963515	0.82[AMR][1000 genomes]
rs10963532	0.81[EUR][1000 genomes]
rs11787601	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11792652	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11793338	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12236389	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1331089	0.83[EUR][1000 genomes]
rs1331098	0.80[ASN][1000 genomes]
rs16936350	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2383064	0.84[AMR][1000 genomes]
rs34283286	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34427821	0.81[AMR][1000 genomes]
rs34580733	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34826359	0.81[EUR][1000 genomes]
rs35512056	0.82[AMR][1000 genomes]
rs35583999	0.84[AMR][1000 genomes]
rs763976	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7872643	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892681	chr9:18127068-18250459	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18126400-18130600	Enhancers	Colon Smooth Muscle	Colon
2	chr9:18127800-18138400	Weak transcription	Aorta	Aorta
3	chr9:18128600-18133600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:18129600-18131000	Enhancers	Stomach Smooth Muscle	stomach
5	chr9:18129800-18130200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr9:18129800-18130200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:18129800-18130200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:18129800-18130200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr9:18129800-18130200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:18129800-18130200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr9:18129800-18130200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:18129800-18130200	Enhancers	Ovary	ovary
13	chr9:18129800-18130400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr9:18130000-18135800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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