Variant report

Variant	rs10963479
Chromosome Location	chr9:18158734-18158735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10963462	0.84[AMR][1000 genomes]
rs10963471	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10963483	0.89[ASN][1000 genomes]
rs10963484	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10963485	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10963507	0.85[ASN][1000 genomes]
rs10963511	0.84[AMR][1000 genomes]
rs10963512	0.84[AMR][1000 genomes]
rs10963513	0.84[AMR][1000 genomes]
rs10963515	0.84[AMR][1000 genomes]
rs11787601	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11789984	0.84[ASN][1000 genomes]
rs11792652	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11793338	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12236389	0.91[AMR][1000 genomes]
rs13299050	0.83[ASN][1000 genomes]
rs1331089	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1360410	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16936350	0.91[AMR][1000 genomes]
rs1944740	0.86[ASN][1000 genomes]
rs1944761	0.85[ASN][1000 genomes]
rs1944764	0.81[ASN][1000 genomes]
rs1944768	0.81[ASN][1000 genomes]
rs2187455	0.85[ASN][1000 genomes]
rs2383064	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34110348	0.86[AMR][1000 genomes]
rs34283286	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34427821	0.87[ASN][1000 genomes]
rs34580733	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34889953	0.86[AMR][1000 genomes]
rs35512056	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35583999	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67294529	0.86[ASN][1000 genomes]
rs7032289	0.86[ASN][1000 genomes]
rs714345	0.85[ASN][1000 genomes]
rs763976	0.91[AMR][1000 genomes]
rs7872643	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892681	chr9:18127068-18250459	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18157000-18160400	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr9:18158200-18158800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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