Variant report

Variant	rs1360410
Chromosome Location	chr9:18159671-18159672
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10810904	0.89[EUR][1000 genomes]
rs10810926	0.80[ASN][1000 genomes]
rs10963479	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10963483	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10963484	0.90[ASN][1000 genomes]
rs10963485	0.94[ASN][1000 genomes]
rs10963507	0.87[ASN][1000 genomes]
rs10963511	0.81[ASN][1000 genomes]
rs10963513	0.81[ASN][1000 genomes]
rs10963517	0.82[ASN][1000 genomes]
rs10963518	0.82[ASN][1000 genomes]
rs10963519	0.82[ASN][1000 genomes]
rs10963522	0.82[ASN][1000 genomes]
rs10963530	0.81[ASN][1000 genomes]
rs10963532	0.81[ASN][1000 genomes]
rs11787601	0.85[AMR][1000 genomes]
rs11789984	0.87[ASN][1000 genomes]
rs12236807	0.80[ASN][1000 genomes]
rs13285216	0.83[ASN][1000 genomes]
rs13290157	0.80[ASN][1000 genomes]
rs13299050	0.87[ASN][1000 genomes]
rs1331098	0.90[EUR][1000 genomes]
rs16936441	0.82[ASN][1000 genomes]
rs16936442	0.81[ASN][1000 genomes]
rs1944740	0.87[ASN][1000 genomes]
rs1944761	0.88[ASN][1000 genomes]
rs1944764	0.83[ASN][1000 genomes]
rs1944768	0.84[ASN][1000 genomes]
rs2187455	0.87[ASN][1000 genomes]
rs2383064	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34110348	0.81[ASN][1000 genomes]
rs34283286	0.81[AMR][1000 genomes]
rs34427821	0.88[ASN][1000 genomes]
rs34580733	0.85[AMR][1000 genomes]
rs34826359	0.81[ASN][1000 genomes]
rs35512056	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35583999	0.85[ASN][1000 genomes]
rs67294529	0.87[ASN][1000 genomes]
rs7032289	0.89[ASN][1000 genomes]
rs714345	0.88[ASN][1000 genomes]
rs7872643	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892681	chr9:18127068-18250459	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18157000-18160400	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr9:18159000-18160200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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