Variant report

Variant	rs35583999
Chromosome Location	chr9:12866214-12866215
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10963462	0.84[AMR][1000 genomes]
rs10963471	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10963479	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10963483	0.87[ASN][1000 genomes]
rs10963484	0.86[ASN][1000 genomes]
rs10963485	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10963507	0.84[ASN][1000 genomes]
rs10963511	0.88[AMR][1000 genomes]
rs10963512	0.88[AMR][1000 genomes]
rs10963513	0.88[AMR][1000 genomes]
rs10963515	0.88[AMR][1000 genomes]
rs11787601	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11789984	0.83[ASN][1000 genomes]
rs11792652	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11793338	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13299050	0.83[ASN][1000 genomes]
rs1331089	0.87[EUR][1000 genomes]
rs1360410	0.85[ASN][1000 genomes]
rs1944740	0.85[ASN][1000 genomes]
rs1944761	0.84[ASN][1000 genomes]
rs1944764	0.81[ASN][1000 genomes]
rs1944768	0.80[ASN][1000 genomes]
rs2187455	0.83[ASN][1000 genomes]
rs2383064	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34283286	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34427821	0.84[ASN][1000 genomes]
rs34580733	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35512056	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35995139	0.82[AMR][1000 genomes]
rs67294529	0.85[ASN][1000 genomes]
rs7032289	0.85[ASN][1000 genomes]
rs714345	0.84[ASN][1000 genomes]
rs7872643	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498136	chr9:12387840-12984158	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2422212	chr9:12448789-13127738	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv892573	chr9:12730636-12874703	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv892574	chr9:12754969-12918226	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv613615	chr9:12830070-12947238	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:12851800-12867000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:12861400-12868000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:12863400-12874600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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